Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000312-TA|BGIBMGA000312-PA|IPR002483|Splicing factor PWI
(869 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces p... 120 1e-27
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 31 0.52
SPBC30D10.04 |swi3||replication fork protection complex subunit ... 30 1.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 30 1.6
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 29 2.1
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 29 3.7
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 29 3.7
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 28 4.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 6.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 28 6.4
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 27 8.5
>SPCC825.05c |||splicing coactivator SRRM1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 301
Score = 120 bits (288), Expect = 1e-27
Identities = 64/154 (41%), Positives = 91/154 (59%), Gaps = 15/154 (9%)
Query: 4 YTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDD 63
Y G + EQ+T F+ +KKLM+ KF +VDM KV ++VLKPWI ++ E++ ED+
Sbjct: 5 YKGVAAEQETLFTTADKKLMRSTKFPASYDTKVDMKKVNIEVLKPWIATRLNELIGFEDE 64
Query: 64 VVIEYVTNQLEEKFPC-------------PKKMQINLTGFLNGKNARLFMGELWELLLSA 110
VVI +V LEE P+K+Q+NLTGFL NA F ELW L++SA
Sbjct: 65 VVINFVYGMLEEAVEASKTSDSQNESTLDPRKVQLNLTGFLE-SNATAFTEELWSLIISA 123
Query: 111 QASENGIPESFTQQKKEEIKKRMEE-QQNKDKDK 143
++ GIPE F +KKEEI K + + +K++ K
Sbjct: 124 SQNQYGIPEKFILEKKEEISKLKDRTEASKEESK 157
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 31.5 bits (68), Expect = 0.52
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 507 IDKNKKSDEVSGKEQNEDEIKTKESKRAKRKA 538
++ +KK V E++EDE KE KR K++A
Sbjct: 422 VEDSKKRKSVESSEKDEDEAAKKEEKRRKKEA 453
>SPBC30D10.04 |swi3||replication fork protection complex subunit
Swi3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 181
Score = 29.9 bits (64), Expect = 1.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 108 LSAQASENGIPESFTQQKKEEIKKRMEEQQ 137
+S AS++G+ + + K+EE+KK EE++
Sbjct: 1 MSTAASDSGVEKLVEENKREEVKKNEEEKE 30
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 456 EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDE 515
+KP + + D DD E +++ + + E P + D+NK +E
Sbjct: 351 QKPGKSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEP---SEKDDENKDVEE 407
Query: 516 VSGKEQNEDEIKTKESKR 533
+EQ E++I +E+KR
Sbjct: 408 EQEQEQEEEQIDPEEAKR 425
>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 497
Score = 29.5 bits (63), Expect = 2.1
Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 10/72 (13%)
Query: 470 SDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEI--K 527
S + D +E+ DI ++ E +++S PS ++ + DK +K E S K+++ D+ +
Sbjct: 434 SVNIDGDEEVDI----DVEETVETISEKPS---KKEKKDKKEKKKEKSKKKRSADDASEE 486
Query: 528 TKESKRAKRKAH 539
K+SK+ K+K+H
Sbjct: 487 VKKSKK-KKKSH 497
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 473 TDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEID-KNKKSDEVSGKEQNEDEIKTKES 531
T+DEE D + +Y+KSL+ F ID K+ +++ + ++++I ++E
Sbjct: 1008 TEDEEISDCYLALPIEDYAKSLTEVDYNFFENRGIDYKSNPTEQSTVLVSSDNDISSQEI 1067
Query: 532 K 532
K
Sbjct: 1068 K 1068
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 28.7 bits (61), Expect = 3.7
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 57 ILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWELLLSAQASENG 116
+LN E+D E + E+ FP P ++ +G + A +MG+ + E+G
Sbjct: 52 LLNFENDSEAEQT--RFEQNFP-PIDAEMQASGTFSAPKAP-YMGQAE---VHPPEDESG 104
Query: 117 IPESFTQQKKEEIKKRMEEQQNKDKDKE 144
PE + K++++K+ E ++ K +E
Sbjct: 105 DPEPVRKWKEDQMKRIQERDESSKKLRE 132
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 233 NSPTVNEPVNDENKEPTITQNVEEKSEVEGQKSRSVSPAKSK 274
N +V E +E KE + ++ +SE EG+ + + SP K
Sbjct: 46 NEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPK 87
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 6.4
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 470 SDHTDDEEKED--IVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIK 527
S+H ++ +KE+ I N +L E + ++T F H+ N K+D V QN IK
Sbjct: 743 SNHDNEVKKENNRIRNASSLMENPRVSTKTFDNFTLTHDSTINVKADTVKRARQN--NIK 800
Query: 528 TKE 530
K+
Sbjct: 801 NKD 803
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 1 MMMYTGTSTEQDT---RFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKI--T 55
++ Y+ TS++ T RF + + DCL V+ K +LD+LK T+ + T
Sbjct: 561 LLQYSKTSSQMFTTLMRFQPLFFRTRVRTSISDCLHLLVNRIKQELDLLKTRFTEDVSDT 620
Query: 56 EILNMED 62
E++ M +
Sbjct: 621 ELIAMNE 627
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 27.5 bits (58), Expect = 8.5
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 468 TQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFL--RRHEIDKNKKSDEVSGKEQNEDE 525
+ + ++ EK+ VN PN +S ++ +L R +++++ + SG + +
Sbjct: 7 SSQESSNKSEKDTTVNSPNASSFSSFFKKSSQTYLSKRSEKLNEHNSKLKSSGSFTSNSQ 66
Query: 526 IKTKESKRAKRK 537
S +K+K
Sbjct: 67 TDLSNSPSSKKK 78
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.305 0.124 0.335
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,240
Number of Sequences: 5004
Number of extensions: 82927
Number of successful extensions: 280
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 16
length of query: 869
length of database: 2,362,478
effective HSP length: 79
effective length of query: 790
effective length of database: 1,967,162
effective search space: 1554057980
effective search space used: 1554057980
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 58 (27.5 bits)
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