Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000312-TA|BGIBMGA000312-PA|IPR002483|Splicing factor PWI
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0509 - 9003330-9003446,9003587-9003673,9004113-9004280,900... 141 3e-33
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 39 0.020
03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798 37 0.060
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 36 0.11
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 33 0.74
09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629 32 1.7
08_02_1325 - 26146775-26147247,26147397-26148579 32 2.3
02_05_0891 - 32554355-32555305 31 5.2
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 31 5.2
12_01_0033 - 272848-272943,274026-274169,274264-274375,274521-27... 30 6.9
11_01_0035 - 256087-256185,256287-256430,256521-256632,256777-25... 30 6.9
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 30 6.9
01_06_1430 - 37309737-37309946,37310049-37310100,37310348-373104... 30 6.9
06_01_0293 - 2139421-2139600,2139716-2140471,2140830-2140935,214... 30 9.2
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 30 9.2
>03_02_0509 -
9003330-9003446,9003587-9003673,9004113-9004280,
9004835-9004957,9005081-9005170,9005275-9005295
Length = 201
Score = 141 bits (341), Expect = 3e-33
Identities = 67/133 (50%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
Query: 4 YTGTSTEQDTRFSDKEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMEDD 63
+ GTS +QDTRFS+K+ KL+K KF L VDM+KVK+DV+KPWI ++TE+L ED+
Sbjct: 6 FRGTSADQDTRFSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELLGFEDE 65
Query: 64 VVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQ 123
V+I ++ LEEK KK+QI LTGF+ KN FM ELW LLLSAQ + +G+P+ F
Sbjct: 66 VLINFIYGLLEEKEADGKKIQIQLTGFME-KNTVKFMKELWSLLLSAQQNASGVPQQFLD 124
Query: 124 QKKEEIKKRMEEQ 136
K+ EI+++ E+
Sbjct: 125 AKEAEIQQKKAEE 137
>08_02_0672 -
19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 38.7 bits (86), Expect = 0.020
Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 46 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWE 105
++PWI +KI E L E+ +++Y+ + ++ K +++ L L+ A +F+ ++W
Sbjct: 843 MRPWIAKKIIEFLGEEESTLVDYIVSCTKDHVQASKMLEL-LQSILD-VEAEMFVLKMWR 900
Query: 106 LLL 108
+L+
Sbjct: 901 MLI 903
>03_06_0710 + 35676497-35677204,35677837-35677921,35679722-35679798
Length = 289
Score = 37.1 bits (82), Expect = 0.060
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 456 EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDE 515
E PPP P N+ + + +K+ P+ K + P P R+H+ K++K
Sbjct: 47 EAPPPPPANNKRLNPQGGSNRKKKADAGTPS----KKPKRQPPEPKPRKHKGAKSEKPHR 102
Query: 516 VSGKEQNEDEIKTKESKRAKRK 537
VSG+ + K K+ K + ++
Sbjct: 103 VSGEGEKPTPTKKKKKKESSKE 124
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 36.3 bits (80), Expect = 0.11
Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 467 KTQSDHTDDEEKEDIVNIP---NLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNE 523
K +S+ + DE E+ + P +++ + S + PSP + EI + +SDE +++
Sbjct: 319 KDESEDSSDESSEESGDEPPQKKIKDSTTSGTTKPSPKATKKEISSDDESDEDDSSDESS 378
Query: 524 DE-IKTKESKRAKRKA 538
DE +K K+++ K +A
Sbjct: 379 DEDVKQKQTQAKKVQA 394
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 33.5 bits (73), Expect = 0.74
Identities = 28/121 (23%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
Query: 29 GDCLTQQVDMSK-VKLDVLKPWITQKITEIL-NMEDDVVI---EYVTNQLEEKFPCPKKM 83
G + V +SK ++ KP + ++ E+ N+E+D E+V N+L F +
Sbjct: 313 GTLIPADVFISKGTPFNLTKPLVQNQVVELASNIENDPSAAHSEHVGNRLH-MFGNGNSL 371
Query: 84 QINLTGFLNGKNARLFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDK 143
N +G A + +LW L Q+ + +KE++K + Q+N++ K
Sbjct: 372 SENQSGCEKTMIAGSEVSQLWTLAPQMQSDQQSTSAGAHSMQKEDLKLTPDSQENEESKK 431
Query: 144 E 144
+
Sbjct: 432 Q 432
>09_02_0170 - 5273607-5273929,5274272-5274350,5274627-5274629
Length = 134
Score = 32.3 bits (70), Expect = 1.7
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
Query: 475 DEEKEDIVNIPNL------REYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKT 528
D++K IV N+ E K + RT +D+ K+ +E KE+ E E K
Sbjct: 37 DKDKVTIVGNENMDVTCLTMELRKQMRRTHIVIDTVTPVDEKKEKEEKEKKEKEEKEKKE 96
Query: 529 KESKRAKRKAHQ 540
KE K K+K +
Sbjct: 97 KEEKEKKKKEEE 108
>08_02_1325 - 26146775-26147247,26147397-26148579
Length = 551
Score = 31.9 bits (69), Expect = 2.3
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 491 SKSLSRTPSPFLRRHEIDKNKK-SDEVSG---KEQNEDEIKTKESKRAKRKAHQ 540
S ++ P F +H+ K+KK S E G KE+N D K K SK+ KR+ H+
Sbjct: 2 SINVEYAPRFFQGKHKEKKHKKESKERRGRERKEKNSDRRKDKHSKKHKREKHK 55
>02_05_0891 - 32554355-32555305
Length = 316
Score = 30.7 bits (66), Expect = 5.2
Identities = 17/75 (22%), Positives = 34/75 (45%), Gaps = 8/75 (10%)
Query: 458 PPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVS 517
PPP P + + +D +E E+ E +S P+P + + + +E S
Sbjct: 10 PPPPPVASSEETASGSDSDESEE--------EEEESPLAQPAPVVSNKGAESDSSGEEES 61
Query: 518 GKEQNEDEIKTKESK 532
+E+ ED +++ +K
Sbjct: 62 EEEEEEDLVRSSATK 76
>01_01_0908 +
7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 30.7 bits (66), Expect = 5.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 19 EKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILN 59
+KKLMK+ + T Q D+S KL KP + ++EI+N
Sbjct: 339 DKKLMKKQQHSKKRTAQADVSDAKLCRRKPKKVRLLSEIIN 379
>12_01_0033 -
272848-272943,274026-274169,274264-274375,274521-274702,
274781-274912,275038-276330,279841-280545,280649-280695,
280787-280865
Length = 929
Score = 30.3 bits (65), Expect = 6.9
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 32 LTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVI-EYVTNQLEEKFPCPKKMQINLTGF 90
L +Q+ + V++D+LK I E ++DDV +LE K++Q +
Sbjct: 142 LHRQLKIKMVEIDMLKMTINSLQEERKKLQDDVARGTGAKRELEAARNKIKELQRQIQME 201
Query: 91 LNGKNARLFMGELWELLLSAQASENGIPESFTQQKKEEIKK-RMEEQQNKDKDKE 144
N +L + + + L ++ E I ++ Q+K +++K+ +E + + K+KE
Sbjct: 202 ANQTKGQLLLLKNQVIALKSKEEEAAIKDAEVQRKLKKLKELEVEVVELRRKNKE 256
>11_01_0035 -
256087-256185,256287-256430,256521-256632,256777-256958,
257038-257169,257297-258589,259133-259837,260465-260549,
260604-260650,260810-260900,261838-262101,262195-262309,
262455-262570,262713-262847,262969-263036,263292-263411
Length = 1235
Score = 30.3 bits (65), Expect = 6.9
Identities = 27/115 (23%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 32 LTQQVDMSKVKLDVLKPWITQKITEILNMEDDVVI-EYVTNQLEEKFPCPKKMQINLTGF 90
L +Q+ + V++D+LK I E ++DDV +LE K++Q +
Sbjct: 447 LHRQLKIKMVEIDMLKMTINSLQEERKKLQDDVARGTGAKRELEAARNKIKELQRQIQME 506
Query: 91 LNGKNARLFMGELWELLLSAQASENGIPESFTQQKKEEIKK-RMEEQQNKDKDKE 144
N +L + + + L ++ E I ++ Q+K +++K+ +E + + K+KE
Sbjct: 507 ANQTKGQLMLLKNQVIALKSKEEEAAIKDAEVQRKLKKLKELEVEVVELRRKNKE 561
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 30.3 bits (65), Expect = 6.9
Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 11/93 (11%)
Query: 456 EKPP---PEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFL------RRHE 506
EK P P+ D +S ++EEKE L EY K L L R+ E
Sbjct: 215 EKKPEDVPQSEVDKDKESPENEEEEKEPEDKEMTLEEYEKVLEEKRKALLALKAEERKVE 274
Query: 507 IDKNKKS-DEVSGKEQNEDE-IKTKESKRAKRK 537
+DK ++ ++S K+ NE+ IK K K+K
Sbjct: 275 VDKELQAMQQLSVKKANEEVFIKLGSDKDLKKK 307
>01_06_1430 -
37309737-37309946,37310049-37310100,37310348-37310427,
37310538-37310606,37310710-37310843,37311173-37311332,
37311483-37311554,37312113-37312246,37312386-37312521,
37313273-37313416
Length = 396
Score = 30.3 bits (65), Expect = 6.9
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 475 DEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESK 532
DEEK D R Y + + PS FL+ + ++K SD V GKE+ +E + K
Sbjct: 136 DEEKMD-----RERSYETGIFKKPSDFLQMFKDVQSKVSDVVLGKEKPVEESSPEYEK 188
>06_01_0293 -
2139421-2139600,2139716-2140471,2140830-2140935,
2140999-2141249,2141342-2141443,2141557-2141876,
2142350-2142546,2143668-2143786,2143876-2143997,
2144877-2145081
Length = 785
Score = 29.9 bits (64), Expect = 9.2
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 464 NDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNE 523
+D T H+ D+E + I LR + L + + ++ +D N+K ++ G + E
Sbjct: 309 SDMATNLKHSHDQEYLKL-EIERLRVKLRHLQKL-NELAQKESLDANQKLHKL-GIQDIE 365
Query: 524 DEIKTKESKRAKRKAHQ 540
DEIK KE++ + K +
Sbjct: 366 DEIKLKETELTEEKVRR 382
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 29.9 bits (64), Expect = 9.2
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 462 PFNDGKTQSDHTDDEEK-EDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKE 520
P G +Q+ + D ++ D+ +RE S + + ++ +D+ +K DE K+
Sbjct: 1908 PNEHGSSQTSNVQDNKQLHDVGLQTQVRERSVDIGQQDED-MKNVNLDQQQKEDEEIEKQ 1966
Query: 521 QNEDEI-KTKESKRAKRKAH 539
+ ++EI K KE + + H
Sbjct: 1967 KEDEEIEKQKEELQTDEQKH 1986
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.305 0.124 0.335
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,500,669
Number of Sequences: 37544
Number of extensions: 504352
Number of successful extensions: 1327
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1314
Number of HSP's gapped (non-prelim): 25
length of query: 869
length of database: 14,793,348
effective HSP length: 88
effective length of query: 781
effective length of database: 11,489,476
effective search space: 8973280756
effective search space used: 8973280756
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 64 (29.9 bits)
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