Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000312-TA|BGIBMGA000312-PA|IPR002483|Splicing factor PWI
(869 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 4e-33
SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.035
SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.035
SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.32
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 34 0.43
SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08) 34 0.43
SB_38133| Best HMM Match : TolA (HMM E-Value=0.38) 34 0.57
SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.3
SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 3.0
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.0
SB_38797| Best HMM Match : Extensin_2 (HMM E-Value=2.3) 31 4.0
SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09) 31 4.0
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.0
SB_8346| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 4.0
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 31 4.0
SB_15610| Best HMM Match : DUF1174 (HMM E-Value=7.8) 31 4.0
SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 5.3
SB_49283| Best HMM Match : NapE (HMM E-Value=1.7) 31 5.3
SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6) 31 5.3
SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.0
SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20) 30 7.0
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 30 7.0
SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 7.0
SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10) 30 9.2
SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.2
SB_36059| Best HMM Match : TolA (HMM E-Value=0.1) 30 9.2
SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.2
SB_5924| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 9.2
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 140 bits (339), Expect = 4e-33
Identities = 66/101 (65%), Positives = 81/101 (80%), Gaps = 1/101 (0%)
Query: 38 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLE-EKFPCPKKMQINLTGFLNGKNA 96
M K+ LDVLKPWIT++IT++L EDDVV+E+V N LE EK P PK MQIN+TGFL KNA
Sbjct: 1 MEKINLDVLKPWITKRITDMLGFEDDVVLEFVFNMLESEKHPDPKVMQINITGFLQAKNA 60
Query: 97 RLFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMEEQQ 137
R+FMGELWELL+SAQ + GIP F ++KKEEIK+R EQ+
Sbjct: 61 RIFMGELWELLVSAQENIGGIPTEFLEKKKEEIKQRKLEQE 101
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/19 (73%), Positives = 18/19 (94%)
Query: 843 NNEDLEKKLRERALKSMKK 861
+NE+LEKKLRE+AL SM+K
Sbjct: 1239 DNENLEKKLREKALLSMRK 1257
>SB_51335| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 576
Score = 37.9 bits (84), Expect = 0.035
Identities = 17/77 (22%), Positives = 38/77 (49%)
Query: 461 EPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKE 520
E + +++ +D E++E++ +P+ S + +P +R + K + + K
Sbjct: 84 ESEKESESEGPASDSEQQENLTKMPDREAIESDSSESLTPVRKRQPQKRKKVQSKTNNKS 143
Query: 521 QNEDEIKTKESKRAKRK 537
NE+E + +E K K+K
Sbjct: 144 DNEEEDERQEKKIRKQK 160
>SB_26185| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 682
Score = 37.9 bits (84), Expect = 0.035
Identities = 19/73 (26%), Positives = 44/73 (60%), Gaps = 3/73 (4%)
Query: 46 LKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWE 105
++PWI +KI E + E+ + E++ +++ P PK + +++ L+ + A +F+ ++W
Sbjct: 610 IRPWINKKIVEYIGEEEPTLTEFICSKVLSGSP-PKSILDDVSMVLD-EEAEVFVVKMWR 667
Query: 106 LLL-SAQASENGI 117
LL+ +A + G+
Sbjct: 668 LLIYETEAKKIGL 680
Score = 29.9 bits (64), Expect = 9.2
Identities = 12/25 (48%), Positives = 19/25 (76%)
Query: 120 SFTQQKKEEIKKRMEEQQNKDKDKE 144
SF ++E KKR EE++++DKDK+
Sbjct: 221 SFRDSYRKEDKKREEEKKDRDKDKD 245
>SB_9343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 786
Score = 34.7 bits (76), Expect = 0.32
Identities = 26/119 (21%), Positives = 47/119 (39%), Gaps = 2/119 (1%)
Query: 412 KSVSIPRKENNDKLPKKPEHLPIPREQXXXXXXXXXXXXXXVAVEKPPPEPFNDGKTQSD 471
K+ P K+ + P KP+ + P++Q + + KT +
Sbjct: 492 KTKKKPEKKIKKEPPAKPKPVKPPKQQATKTPKAEKPPKKSASKRSAKSKIVAKKKTIEE 551
Query: 472 HTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRR--HEIDKNKKSDEVSGKEQNEDEIKT 528
+D+EE + R+ S ++R P P L R H I +K S ++ E + +T
Sbjct: 552 DSDEEETAKAMTYDEKRQLSLDINRLPGPKLGRVVHIIQSREKQLRDSNPDEIEIDFET 610
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 34.3 bits (75), Expect = 0.43
Identities = 30/137 (21%), Positives = 55/137 (40%), Gaps = 4/137 (2%)
Query: 406 IKER-LEKSVSIPRKENNDKLPKKP---EHLPIPREQXXXXXXXXXXXXXXVAVEKPPPE 461
I+E+ LEK + K+ + PKK E P E+ VE+ P E
Sbjct: 5234 IEEKPLEKPFTPKDKKGEEVKPKKEKPTEREAKPLEEKPLVEKDELPVSAEKVVEENPLE 5293
Query: 462 PFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQ 521
K + + ++++ V RE + P +++ ++GKE+
Sbjct: 5294 KPITRKEKVEEVKPKKEKPTVREAKSREVKPLVEEKELPVSAEKAVEEEPLEKPITGKEK 5353
Query: 522 NEDEIKTKESKRAKRKA 538
+E+K K+ K +R+A
Sbjct: 5354 KVEEVKPKKEKPTERRA 5370
>SB_27055| Best HMM Match : PWI (HMM E-Value=3.5e-08)
Length = 677
Score = 34.3 bits (75), Expect = 0.43
Identities = 24/107 (22%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 38 MSKVKLDVLKPWITQKITEILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNAR 97
+SK +L+ LKPWI K+ + L + V+ + + + + L L+ A
Sbjct: 4 ISKRELEELKPWIEDKVRKRLGFSEKSVVSAALYCVSKNLD-KRSSREQLASLLDDL-AP 61
Query: 98 LFMGELWELLLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDKE 144
F+ +L++ + S + S++ P+ +Q KK ++ + +K E
Sbjct: 62 QFVDDLFDKVESIRISKHSGPQKGSQSKKRTLEDVFGDDNADEKPAE 108
>SB_38133| Best HMM Match : TolA (HMM E-Value=0.38)
Length = 2114
Score = 33.9 bits (74), Expect = 0.57
Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 455 VEKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSD 514
+EK + F+ K +++ DD++++ N ++ K + E ++ +
Sbjct: 1868 IEKSLQKTFHPKKKENEEEDDKKEKKEENEEEEKKKKKKENEEEDDKKNNKEENEEDEKK 1927
Query: 515 EVSGKEQNEDE-IKTKESKRAKRKAHQ 540
E KE+NE+E K K++K+ K+K +
Sbjct: 1928 EKKKKEENEEEDDKKKKTKKKKKKEEE 1954
>SB_10895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 496
Score = 31.9 bits (69), Expect = 2.3
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 460 PEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGK 519
PEP + ++ D D + P E+ + SP D ++KSDE +
Sbjct: 212 PEPSTNHSSEQDLLDSQTSPCSEPTPGANEFLSTQRNQTSPVQLTRNSD-DEKSDEEAVD 270
Query: 520 EQNEDEIKTKESKRAKRK 537
NE E K +KR +R+
Sbjct: 271 SNNELEGKDSTAKRKQRR 288
>SB_11304| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 31.5 bits (68), Expect = 3.0
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 457 KPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEV 516
KP E +DG+++ D D+ ++ + RE ++ R R E ++N+ D
Sbjct: 326 KPSGEKRDDGESKRDRDRDKNRDKNRDRNREREKNRERDRRDRDRDRAKERERNRDKDRY 385
Query: 517 SGKEQN--EDEIKTKESKRAKRKA 538
GK ++ + K K + K KA
Sbjct: 386 RGKPRDVTSGDAKPKPEETGKAKA 409
>SB_42837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 31.5 bits (68), Expect = 3.0
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 480 DIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKAH 539
D+ ++P REY + R ++ + K KK + K+ +++ K K+ K+ K+K
Sbjct: 3 DVTDVPMRREYREEKKRKKKK--QKKKKKKKKKKKKKKNKKNKKNKNKNKKKKKMKKKKE 60
Query: 540 Q 540
+
Sbjct: 61 E 61
>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1177
Score = 31.1 bits (67), Expect = 4.0
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 468 TQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVS 517
T DHT K ++ + S P PF R++E + NK S+ +S
Sbjct: 799 TTVDHTSQPSKSHSRSLKQRKRKEMSALPQPMPFKRKYEREDNKMSNSIS 848
>SB_38797| Best HMM Match : Extensin_2 (HMM E-Value=2.3)
Length = 308
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 197 VSPAKTEPETKAPSVAENGKSXXXXXXXXXXXXXXXNSPTVNEPVNDENKEPTITQNVEE 256
V +E ET PSV NG S ++P P E ++ T + V+E
Sbjct: 48 VESKPSEEETSVPSVVVNGDSHQEEVVQSSAEVVAESAP---PPAQTETEDTTTPEEVKE 104
Query: 257 KSEV-EGQKSRSVSPAKSK 274
S V + Q ++ PA+++
Sbjct: 105 LSNVLDEQDTKPEEPAEAE 123
>SB_37330| Best HMM Match : S-antigen (HMM E-Value=4.1e-09)
Length = 818
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 7/75 (9%)
Query: 467 KTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQN---- 522
K++++ D+ K D ++ SK S+ + E + K ++ KE+
Sbjct: 420 KSKTEEQTDDGKTDK---KKSKKKSKDKSKNKGEKSKNKEEESKNKEEKSKNKEEESKNK 476
Query: 523 EDEIKTKESKRAKRK 537
E+E K KE KRAK+K
Sbjct: 477 EEESKNKEEKRAKKK 491
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 31.1 bits (67), Expect = 4.0
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 456 EKPPPEPFNDGKTQSDHTDDEEKEDIVNIPNLREYS-----KSLSRTPSPFLRRHEIDKN 510
E P+ D + D ++E +ED N P+ R+ + K + E D+
Sbjct: 722 ENKVPKVDKDDEEDDDDEEEESEEDESNKPSSRQVTAKKEDKKGKKKKKEEEEEEEEDQE 781
Query: 511 KKSDEVSGKEQNEDEIKTKESKRAKRK 537
++ ++ SGK++ + + E +AK++
Sbjct: 782 EEDEDSSGKKKGKKDSSESEKGKAKKQ 808
>SB_8346| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 93
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/65 (21%), Positives = 33/65 (50%)
Query: 466 GKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDE 525
G+T+ D+++E+ N ++ K + +RHE ++ +E G+++NE+
Sbjct: 14 GETKRSKEKDKQEENARNEKKETKHKKQQEKNEKKEEKRHEGGNKQEENEDEGEDENEET 73
Query: 526 IKTKE 530
I ++
Sbjct: 74 IYKRQ 78
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 31.1 bits (67), Expect = 4.0
Identities = 14/48 (29%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Query: 492 KSLSRTPSPFLRRHEIDKNKKSDEVS-GKEQNEDEIKTKESKRAKRKA 538
K +S+T + ++ ++K+ + + KE E ++KTKE+++A+ KA
Sbjct: 1236 KVVSKTKKVVKTKPDVSQDKEKPKAAKAKESGESKVKTKEAEKAEAKA 1283
>SB_15610| Best HMM Match : DUF1174 (HMM E-Value=7.8)
Length = 200
Score = 31.1 bits (67), Expect = 4.0
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 197 VSPAKTEPETKAPSVAENGKSXXXXXXXXXXXXXXXNSPTVNEPVNDENKEPTITQNVEE 256
V +E ET PSV NG S ++P P E ++ T + V+E
Sbjct: 48 VESKPSEEETSVPSVVVNGDSHQEEVVQSSAEVVAESAP---PPAQTETEDTTTPEEVKE 104
Query: 257 KSEV-EGQKSRSVSPAKSK 274
S V + Q ++ PA+++
Sbjct: 105 LSNVLDEQDTKPEEPAEAE 123
>SB_14494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 219
Score = 30.7 bits (66), Expect = 5.3
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 5/81 (6%)
Query: 461 EPFNDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEI-DKNKKSDEVSGK 519
EP K +S+ +EK++ ++ E ++L + + HE+ DKNKKS + +
Sbjct: 54 EPSETEKIESEKKRKKEKKNKKDM----ETQETLKTNNNKKIEHHELADKNKKSKKKRKR 109
Query: 520 EQNEDEIKTKESKRAKRKAHQ 540
+ N++E + S K K +
Sbjct: 110 DDNDEENNVESSPCKKVKGSE 130
>SB_49283| Best HMM Match : NapE (HMM E-Value=1.7)
Length = 363
Score = 30.7 bits (66), Expect = 5.3
Identities = 14/65 (21%), Positives = 32/65 (49%)
Query: 466 GKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDE 525
G+T+ D+++E+ N ++ K +RHE ++ +E G+++NE+
Sbjct: 284 GETKRSEEKDKQEENARNEKKETKHKKQQENNEKKEEKRHEGGNKQEENEDEGEDENEET 343
Query: 526 IKTKE 530
I ++
Sbjct: 344 IYKRQ 348
>SB_13208| Best HMM Match : ThiS (HMM E-Value=1.6)
Length = 1119
Score = 30.7 bits (66), Expect = 5.3
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 56 EILNMEDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFMGELWELLLSAQASEN 115
E L+ E E++TN L P K+M + G + ++R+F +L E+L S +
Sbjct: 308 ETLDREMCTYEEHLTN-LPVSSPRGKEMVRDFEG-RDISSSRVFNEDLSEILTSLSLEKK 365
Query: 116 GIPESFTQQKKE-EIKKRMEEQQNKD 140
+ E T+ K+E E K ++E+ Q +
Sbjct: 366 RLEEKVTENKEEKEDKAKIEDSQTPE 391
>SB_23345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 903
Score = 30.3 bits (65), Expect = 7.0
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 467 KTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEI 526
K H D E KE + R +SK+ S T R+ KNK S++ KE+ + E
Sbjct: 384 KHHKKHKDKEHKEH--HHKKKRSHSKTSSTTDEEKERKKSETKNKDSED-EEKERKKREA 440
Query: 527 KTKESKRAKRK 537
+ +E +R + +
Sbjct: 441 EEEEERRREEE 451
>SB_3033| Best HMM Match : RRM_1 (HMM E-Value=2.3e-20)
Length = 1313
Score = 30.3 bits (65), Expect = 7.0
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 495 SRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKR 533
SR+PSP +RR + DK K++ G+ + K K ++R
Sbjct: 972 SRSPSP-VRRKDKDKEKRTSSTRGRSPTRKDKKDKPARR 1009
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 30.3 bits (65), Expect = 7.0
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 488 REYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESKRAKRKAHQ 540
R Y + L+ S +H+I NKK + S K E K ++ + AK+KA+Q
Sbjct: 107 RSYRQQLADAISEISSQHKIYYNKKRKQESAK-YTEKLKKAQDDEEAKKKANQ 158
>SB_34561| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 30.3 bits (65), Expect = 7.0
Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 500 PFLRRHEIDKNKK-SDEVSGKEQNEDEIKTKESKRAKRKA 538
P++R H + + SDE +Q+++E+ K S R K+KA
Sbjct: 359 PYVRNHNNSRKRPFSDENGVSKQSDEEVTKKISNRQKKKA 398
>SB_45284| Best HMM Match : Nucleoplasmin (HMM E-Value=8.7e-10)
Length = 282
Score = 29.9 bits (64), Expect = 9.2
Identities = 14/68 (20%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 464 NDGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNE 523
++ +++S+ ++E +DI P++++ +++ SP + +++K+ SDE +E+
Sbjct: 107 DESESESEEEEEEAAKDIKK-PDVQKRPLAVNSDKSPPKKVAKVEKDSDSDEEESEEEGM 165
Query: 524 DEIKTKES 531
+ K K++
Sbjct: 166 ELDKVKQN 173
>SB_6714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 233
Score = 29.9 bits (64), Expect = 9.2
Identities = 15/71 (21%), Positives = 32/71 (45%)
Query: 465 DGKTQSDHTDDEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNED 524
+ K + D E+KE++ +E + + + + + E+DK + E KE ED
Sbjct: 43 ENKEDKEEMDKEDKEEMDQEEMDKEDKEEMDKEDKEEMDQEEMDKEEMDQEEMDKEDKED 102
Query: 525 EIKTKESKRAK 535
+ + + + K
Sbjct: 103 KEEMDQEEMDK 113
>SB_36059| Best HMM Match : TolA (HMM E-Value=0.1)
Length = 1936
Score = 29.9 bits (64), Expect = 9.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 102 ELWELLLSAQASENGIPESFTQQKKEEIKKRMEEQQNKDKDKE 144
E ++ L Q +E + +QKK+ +K+ ME Q+ + K+KE
Sbjct: 1188 EEYDALTDDQKAE--VDRKHLEQKKQRLKREMERQEKERKEKE 1228
>SB_25427| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1198
Score = 29.9 bits (64), Expect = 9.2
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 458 PPPEPFNDGKTQSDHTDDEEKEDIVN-----IPNLREYSKSLSRTPSPFLRRHEIDKNKK 512
PPP P + D + E++ +V +P L E S + TP+ + + K
Sbjct: 915 PPPSPLRRSQPLDDIPEHEQESGLVTSNWEPLP-LSEGSAFEAVTPAKTAESKKSKEGSK 973
Query: 513 SDEVSGKE-QNEDEIKTKESKRAKRKAH 539
KE +N + ++KESKR +K H
Sbjct: 974 WFSKKSKETKNGSKKESKESKRDSKKGH 1001
>SB_5924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 29.9 bits (64), Expect = 9.2
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 61 EDDVVIEYVTNQLEEKFPCPKKMQINLTGFLNGKNARLFM-GELWELLLSAQASENGIPE 119
E+D ++ V LEE ++ QINL KN M E ++ +L G
Sbjct: 53 ENDT-LQSVLMGLEEMRMNEEQRQINLEESQKVKNRESGMDNENYKEMLEMCKKYYGKMV 111
Query: 120 SFTQQKKEEIKKRMEEQQNKDKDKE 144
S QQ+K ++K++E QQ++ DK+
Sbjct: 112 SELQQEKSSLQKKVESQQSQLLDKD 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.305 0.124 0.335
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,018,204
Number of Sequences: 59808
Number of extensions: 597162
Number of successful extensions: 2182
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 99
length of query: 869
length of database: 16,821,457
effective HSP length: 88
effective length of query: 781
effective length of database: 11,558,353
effective search space: 9027073693
effective search space used: 9027073693
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 64 (29.9 bits)
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