GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000312-TA|BGIBMGA000312-PA|IPR002483|Splicing factor PWI
         (869 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   1.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   4.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   4.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    24   6.1  
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   8.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   8.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   8.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   8.1  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 456  EKPPPEPFNDGKTQSDHTDDEEKEDI 481
            E PPP P N  +  S   D +E  +I
Sbjct: 1858 EPPPPPPRNHDQNNSSFNDSKESNEI 1883


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
          protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 18 KEKKLMKQMKFGDCLTQQVDMSKVKLDVLKPWITQKITEILNMED 62
          +E  L    K G C   Q  MSK++    KP + ++ T++  +E+
Sbjct: 12 RESLLSNAYKQGFCQPTQRTMSKIQWRKPKPAMVEEKTQLRYLEE 56


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 4.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 464 NDGKTQSDHTDDEEKED 480
           NDG+   D  DDEE E+
Sbjct: 272 NDGEGADDRDDDEENEE 288


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 407 KERLEKSVSIPRKENNDKLPKKPE 430
           +ER  + V  PR++NN  L  KPE
Sbjct: 331 EERRSEPVEPPRRKNNCPLHCKPE 354


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 475 DEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESK 532
           +EE++ +    + + YS+S  R  + +    E  K +++ +   +++ E E +++E K
Sbjct: 24  NEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE-RSREPK 80


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 475 DEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESK 532
           +EE++ +    + + YS+S  R  + +    E  K +++ +   +++ E E +++E K
Sbjct: 24  NEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE-RSREPK 80


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 475 DEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESK 532
           +EE++ +    + + YS+S  R  + +    E  K +++ +   +++ E E +++E K
Sbjct: 24  NEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE-RSREPK 80


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 12/58 (20%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 475 DEEKEDIVNIPNLREYSKSLSRTPSPFLRRHEIDKNKKSDEVSGKEQNEDEIKTKESK 532
           +EE++ +    + + YS+S  R  + +    E  K +++ +   +++ E E +++E K
Sbjct: 24  NEEEKLLEERTSRKRYSRSREREQNSYKNEREYRKYRETSKERSRDRTERE-RSREPK 80


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.305    0.124    0.335 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,017
Number of Sequences: 429
Number of extensions: 5024
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 9
length of query: 869
length of database: 140,377
effective HSP length: 64
effective length of query: 805
effective length of database: 112,921
effective search space: 90901405
effective search space used: 90901405
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (21.9 bits)
S2: 48 (23.4 bits)