GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000310-TA|BGIBMGA000310-PA|IPR000195|RabGAP/TBC
         (480 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   4.7  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           23   4.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 281  DRILSARSADEFYSCMGGGAGAVW 304
            D I   R   EF   MG G G +W
Sbjct: 2140 DDIGMIRHKSEFIKAMGLGGGMIW 2163


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 167 SDSLKVMIYLVEAVLPEGYFADDLRGLSADM 197
           SDSL   IY  +++ P+  F DD  G S D+
Sbjct: 192 SDSLSPGIYSEQSLSPDTVFGDD--GKSEDV 220


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.136    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,831
Number of Sequences: 317
Number of extensions: 3138
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 480
length of database: 114,650
effective HSP length: 59
effective length of query: 421
effective length of database: 95,947
effective search space: 40393687
effective search space used: 40393687
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)