Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000310-TA|BGIBMGA000310-PA|IPR000195|RabGAP/TBC
(480 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 100 9e-22
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 73 9e-14
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 67 6e-12
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 58 3e-09
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch... 52 1e-07
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po... 49 1e-06
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 36 0.012
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 33 0.088
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 32 0.20
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 30 0.62
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 27 7.7
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 99.5 bits (237), Expect = 9e-22
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 13/191 (6%)
Query: 105 AQILKDLHRTGC-SLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMD 163
AQI D++RT ++F G +G LRR+L+AY+R N +GYCQG N++ A +L ++
Sbjct: 545 AQIDMDINRTMAKNVFFGGKG-PGIPKLRRILVAYSRHNPHIGYCQGMNVIGAFLL-LLY 602
Query: 164 KSESDSLKVMIYLVEAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISD 223
SE D+ +++ ++E VLP YF DL AD H++ L
Sbjct: 603 ASEEDAFYMLMSIIENVLPPKYFTPDLMTSRADQLVLKSFVKESLPEIYSHLELL----- 657
Query: 224 GGGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRI 283
G++ D + WFL++Y LP RI+D++ DG L AL I L+ +I
Sbjct: 658 --GVDL---DAISFHWFLSVYTDTLPTNISFRIFDMLFCDGYVCLFRVALTILKSLKQQI 712
Query: 284 LSARSADEFYS 294
L+ S+ YS
Sbjct: 713 LACNSSSAIYS 723
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 72.9 bits (171), Expect = 9e-14
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 9/167 (5%)
Query: 131 LRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGYFADDL 190
LRRVL+ +A + E GYCQ N LA L M SE + +++ LP+ + A+ L
Sbjct: 388 LRRVLMTFATYLPENGYCQSLNFLAGFFLLFM--SEEKAFWMLVITCRKYLPKMHDAN-L 444
Query: 191 RGLSAD----MAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLYAT 246
G + D MA+ + + D + ++D PP+ V T WF++ +
Sbjct: 445 EGANIDQSVLMASVRESLPAVWSRISLNFDGIP-VNDIVAKLPPITLV-TAAWFMSAFVG 502
Query: 247 WLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRILSARSADEFY 293
LP E+ LR+WD +G++VL +TAL I + +D I S E +
Sbjct: 503 ILPTETALRVWDCFFYEGSKVLFMTALCILRLGEDDIKSKSEQTEVF 549
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 66.9 bits (156), Expect = 6e-12
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 15/157 (9%)
Query: 131 LRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGYFADDL 190
LRR+LL Y+ NKEVGYCQ N++ A +L +E + + L E +P GY+A +
Sbjct: 284 LRRILLFYSETNKEVGYCQAMNIVLAALLVYC--TEEQAYFLFSQLCEFYIP-GYYAKII 340
Query: 191 RGLSADMAAFXXXXXXXXXXXAHHMDHL-QRISDGGGIEPPLPDVFTMQWFLTLYATWLP 249
GL D+ F H + HL Q+I + ++ L + T+ WF +L+
Sbjct: 341 HGLLLDLTVF-------EYVLEHTLPHLYQKIIE---LDMDL-KLITINWFFSLFIKDFR 389
Query: 250 RESLLRIWDLILLDGNEVLLLTALAIWDMLQDRILSA 286
+ RI D + ++G VL ALA++ + IL+A
Sbjct: 390 LDYAFRILDCLFVNGPRVLFQVALALFKVNAQGILNA 426
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 58.0 bits (134), Expect = 3e-09
Identities = 56/218 (25%), Positives = 94/218 (43%), Gaps = 21/218 (9%)
Query: 106 QILKDLHRTGCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKS 165
+I KDL R+ + + E LR VL+A++ N+EVGYCQ N++AA +L + +
Sbjct: 264 EIEKDLGRS-LPEYPAYQNEEGINALRNVLVAFSWKNQEVGYCQAMNIVAAALL--IHCT 320
Query: 166 ESDSLKVMIYLVEAVLPEGYFADDLRGLSADMAAFXXXXXXXX-XXXAHHMDHLQRISDG 224
E + +M + E +P GY++ + G D + AH + ++S
Sbjct: 321 EEQTFFLMHKICEDYIP-GYYSKTMYGTLIDQQVYESLVQRSMPNLHAHFVSKDIQLS-- 377
Query: 225 GGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
+ ++ WFL+L+ +P R+ D L+G VL +AI + I+
Sbjct: 378 ---------IISLPWFLSLFLCTMPLPYAFRLLDFFFLEGPRVLFQIGMAILYDNEAEIM 428
Query: 285 SARSADEFYSCMGG-----GAGAVWEAGDSLVARVVAF 317
A S + G A +A D VA + F
Sbjct: 429 KATEDTMLISILKNYFSSLGDKAYKDATDKRVASITKF 466
>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1031
Score = 52.4 bits (120), Expect = 1e-07
Identities = 42/159 (26%), Positives = 71/159 (44%), Gaps = 12/159 (7%)
Query: 126 ENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGY 185
E+ A L RVL + A +VGY QG + +A +L M + ++++L + +
Sbjct: 680 ESTANLHRVLRSLAIVLPQVGYTQGMSWIAGALL--MHLPAPQAFALLVFLFKNYHLQNI 737
Query: 186 FADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLYA 245
F+ ++RGLS + F A H Q I + +WFLTL+A
Sbjct: 738 FSSEMRGLSRVLHQFTRLVEDYMPSLAIHFKR-QDIKTCS---------YASEWFLTLFA 787
Query: 246 TWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
P E + ++D++ L G +L LA+ Q+ +L
Sbjct: 788 YKFPLEVVAHLYDILFLYGPGILFNFGLALLSHSQESLL 826
>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 414
Score = 49.2 bits (112), Expect = 1e-06
Identities = 64/220 (29%), Positives = 97/220 (44%), Gaps = 26/220 (11%)
Query: 106 QILKDLHRTGCSLFCGAEGR-ENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDK 164
QI D+ RT + F + Q +L RVL A A + VGY QG +AA +L +
Sbjct: 198 QIDLDVPRTAATHFLFRKRYIGGQRLLFRVLHAVALYIPRVGYVQGMASIAATLL--IYY 255
Query: 165 SESDSLKVMIYLVEAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDG 224
E + +M+ L+E F+ G + AF + HL I
Sbjct: 256 PEEQAFIMMVNLLENRGMGDLFSS---GFDTLLKAFDMLKHELSFTQSGR--HLAEI--- 307
Query: 225 GGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILL----DGNEVLLL--TALAIWDM 278
G E P F +W+LT++ +P + LRIWDL+ L G V LL T+LA+
Sbjct: 308 -GAE---PSAFATRWYLTVFHQCVPFHTQLRIWDLLFLLGGSKGQTVRLLQATSLAVIQG 363
Query: 279 LQDRILSARSADEFYSCMGGGAGAVWEAGD-SLVARVVAF 317
+ D ++ A +F M +G + D +L+AR+ F
Sbjct: 364 MWDTLIDA----DFEVVMQALSGVIPIQNDNALLARIQLF 399
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 35.9 bits (79), Expect = 0.012
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 74 ERNLTARGVDWLVAERACFRGTAQPD--DTELGAQILKDLHRTGCSLFCGAEGRENQAML 131
E L + ++ A+ +CF +P D + QI+ D+ RT S+ + Q ML
Sbjct: 241 EVTLKRKRDEYNAAKDSCFNTNTEPPPLDQTIWRQIVLDVPRTNPSILL-YQNPLTQRML 299
Query: 132 RRVLLAYARWNKEVGYCQGFNMLAAIILEV 161
R+L +A + GY QG + L ++V
Sbjct: 300 ERILYVWASRHPASGYVQGISDLVTPFIQV 329
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 33.1 bits (72), Expect = 0.088
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 13/160 (8%)
Query: 125 RENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEG 184
R +Q+ L R+L AY W + Y QG N+LA+ L KSE+ + + L++ P
Sbjct: 97 RVSQSSLSRLLNAYV-WKRGALYVQGMNVLASPFLYAC-KSENQAFQFFDRLLQNECPL- 153
Query: 185 YFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLY 244
Y ++ G+ H + +S G ++ + LTL
Sbjct: 154 YVLPNIDGVHR-----GAKLLDKCLEVLDHRLYTYLLSKG-----LTAKIYALPSILTLS 203
Query: 245 ATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
A P L IWD + G + +L +A + +++++
Sbjct: 204 ACTAPLSEALTIWDFLFAYGIHLNILCVIAQMFIFREQLI 243
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 31.9 bits (69), Expect = 0.20
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 84 WLVAERACFRGTAQPDDTELGAQILKDL-HRTGCSLFCGAEGRENQAMLRRVLLAYARWN 142
W + +R D + ++DL H S F G N M++ +LL Y ++
Sbjct: 467 WFIEQRNRIEKDVHRTDRQHEYFQIEDLPHPDPQSTFTGTN--MNMEMMKDILLTYNEYD 524
Query: 143 KEVGYCQGFNMLAAII 158
E+GY QG + L A I
Sbjct: 525 TELGYVQGMSDLLAPI 540
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 30.3 bits (65), Expect = 0.62
Identities = 30/139 (21%), Positives = 53/139 (38%), Gaps = 14/139 (10%)
Query: 133 RVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGYF------ 186
R+L YA+ N +GY QG N + A + V+ +D YL E + +F
Sbjct: 254 RILFIYAKLNPGIGYVQGMNEILAPLYYVL---ATDPTYENYYLCEC---DAFFLFTQMM 307
Query: 187 --ADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLY 244
DL + D + + + + + P ++ +WF L
Sbjct: 308 VQVRDLYEKTLDHDSDHGIHFLMSKFTERLKKYDYELWENLEEKQIHPTYYSFRWFTCLL 367
Query: 245 ATWLPRESLLRIWDLILLD 263
+ P ++R+WD I+ D
Sbjct: 368 SQEFPLPDVIRLWDSIIAD 386
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 26.6 bits (56), Expect = 7.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 147 YCQGFNMLAAIILEVMDKSESDSLKVMIYL 176
Y FNMLAA +LE+ + S D K+ +Y+
Sbjct: 523 YDNSFNMLAAPLLELENVSSLDVKKLDMYM 552
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.322 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,693,821
Number of Sequences: 5004
Number of extensions: 56346
Number of successful extensions: 121
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 102
Number of HSP's gapped (non-prelim): 17
length of query: 480
length of database: 2,362,478
effective HSP length: 75
effective length of query: 405
effective length of database: 1,987,178
effective search space: 804807090
effective search space used: 804807090
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)
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