Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000310-TA|BGIBMGA000310-PA|IPR000195|RabGAP/TBC
(480 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0145 - 22690212-22690472,22690701-22690818,22691125-226912... 101 1e-21
01_06_1257 - 35778078-35778299,35778952-35779069,35779294-357794... 86 7e-17
08_02_0271 - 15156737-15156868,15157134-15157235,15157342-151574... 79 6e-15
08_02_0654 - 19732679-19732837,19733234-19733479,19734470-197346... 65 1e-10
03_02_0596 + 9714022-9714065,9714799-9714868,9714978-9715883,971... 46 7e-05
07_03_0657 + 20362266-20362488,20362576-20362698,20362779-203628... 39 0.010
11_06_0222 - 21413676-21413696,21413813-21413896,21414042-214143... 37 0.031
02_05_0483 - 29391929-29392256,29393048-29393148,29393640-293938... 37 0.041
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 36 0.054
02_05_1171 + 34672997-34673122,34673500-34673595,34674126-346742... 36 0.071
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031... 36 0.094
10_08_0639 + 19505934-19506088,19506584-19506633,19508153-195088... 35 0.16
05_05_0214 + 23319507-23321540 33 0.50
01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365 32 0.88
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072... 32 1.2
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 31 1.5
03_01_0216 - 1700223-1700666,1700749-1700860,1701534-1701837,170... 31 2.0
04_04_1496 + 33986938-33987225,33988545-33988664 31 2.7
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 30 3.5
06_03_1011 - 26882011-26882157,26882576-26884248,26884607-268847... 30 4.7
06_03_1144 - 27980216-27980896,27981682-27982048,27983499-279836... 29 6.2
06_01_0868 - 6606913-6607000,6607516-6608010,6610313-6610761,661... 29 6.2
05_03_0436 + 14006683-14006863,14007618-14008036 29 8.2
>05_05_0145 -
22690212-22690472,22690701-22690818,22691125-22691261,
22691743-22691844,22691921-22692001,22692325-22692394,
22692628-22692689,22692908-22693320,22693424-22693507,
22694180-22694272,22694376-22694427,22694542-22694608,
22694714-22694772,22694920-22695033,22695174-22695347,
22695444-22695935,22696021-22696090,22696649-22696692
Length = 830
Score = 101 bits (243), Expect = 1e-21
Identities = 71/231 (30%), Positives = 120/231 (51%), Gaps = 22/231 (9%)
Query: 106 QILKDLHRTGCSLFCG--AEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMD 163
QI KDL RT F G A + + LRR+LLAYAR N VGYCQ N A ++L +M
Sbjct: 257 QIEKDLPRT----FPGHPALDEDGRNALRRLLLAYARHNPAVGYCQAMNFFAGLLLLLMP 312
Query: 164 KSESDSLKVMIYLVEAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISD 223
E ++ ++ +++ +GYF++++ D A+H+D+L
Sbjct: 313 --EENAFWTLVGIIDDYF-DGYFSEEMIESQVDQLVLEELVREKFPKLANHLDYL----- 364
Query: 224 GGGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLL-TALAIWDMLQDR 282
G++ T WFL+++ LP ES+LR+WD++L DGN V+L TALA+ +
Sbjct: 365 --GLQVAW---VTGPWFLSIFTNVLPWESVLRVWDVLLFDGNRVMLFRTALALLEFYGPA 419
Query: 283 ILSARSADEFYSCMGGGAGAVWEAGDSLVARVVAFGSAPE--LPRLRSLHR 331
+++ + A + + + AG+ +++ ++ + + S E L LR+ HR
Sbjct: 420 LVTTKDAGDAVTLLQSLAGSTFDSSQLVLTARMGYQSVDETGLQELRNKHR 470
>01_06_1257 -
35778078-35778299,35778952-35779069,35779294-35779433,
35779763-35779864,35779971-35780051,35780333-35780402,
35781053-35781114,35781789-35782183,35782303-35782386,
35782949-35783041,35783144-35783195,35783310-35783376,
35783492-35783550,35784209-35784256,35784927-35785040,
35785162-35785335,35785417-35785944,35786025-35786094,
35786668-35786711
Length = 840
Score = 85.8 bits (203), Expect = 7e-17
Identities = 69/244 (28%), Positives = 121/244 (49%), Gaps = 32/244 (13%)
Query: 106 QILKDLHRTGCSLFCG--AEGRENQAMLRRVLLAYARWNKEVGYCQ-GFNMLAAIILEVM 162
QI KDL RT F G A + + LRR+L AYAR N VGYCQ ++ L I+L V
Sbjct: 269 QIEKDLPRT----FPGHPALDEDGRNALRRLLTAYARHNPSVGYCQRKYSSLYMILLNVF 324
Query: 163 DKSESDSLKVMIYL---------VEAVLP---EGYFADDLRGLSADMAAFXXXXXXXXXX 210
K+ + +++ L + ++ +GYF++++ D
Sbjct: 325 FKAMNFFAGLLLLLMPEENAFWALTGIMDDYFDGYFSEEMIECQVDQLVLEELVREKFPK 384
Query: 211 XAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLL 270
+H+D+L G++ T WFL+++ LP ES+LR+WD++L DGN V+L
Sbjct: 385 LVNHLDYL-------GVQVAW---VTGPWFLSIFMNMLPWESVLRVWDVLLFDGNRVMLF 434
Query: 271 -TALAIWDMLQDRILSARSADEFYSCMGGGAGAVWEAGDSLVARVVAFGSAPE--LPRLR 327
TALA+ ++ +++ + A + + + AG+ +++ ++ + + + E L LR
Sbjct: 435 RTALALMELYGPALVTTKDAGDAVTLLQSLAGSTFDSSQLVLTACMGYQAVDEARLQELR 494
Query: 328 SLHR 331
+ HR
Sbjct: 495 NKHR 498
>08_02_0271 -
15156737-15156868,15157134-15157235,15157342-15157419,
15157523-15157616,15157736-15157872,15157989-15158105,
15158470-15158940
Length = 376
Score = 79.4 bits (187), Expect = 6e-15
Identities = 69/227 (30%), Positives = 104/227 (45%), Gaps = 30/227 (13%)
Query: 59 GVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTELGAQILKDLHRT-GCS 117
GVP R K+WL+++ V + R T + T QI DL RT C
Sbjct: 109 GVPPVLRPKVWLSVSGAAKKRSTVPETYYDEL-IRAT-EGKTTPATLQIDHDLPRTFPCH 166
Query: 118 LFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLV 177
+ +E E QA LRRVL+ Y+ + EVGYCQ +E D+ ++ L+
Sbjct: 167 SWLNSE--EGQASLRRVLVGYSFRDSEVGYCQ---------------TEEDAFWMLAVLL 209
Query: 178 EAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTM 237
E VL + D+L G + F A H++ + G + L
Sbjct: 210 ENVLVNDCYTDNLSGCHVEQRVFKDLLAKKCPRIAAHLEAM-------GFDVSL---VAT 259
Query: 238 QWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
+WFL L++ LP E+ LR+WD++ +G +VL ALAI+ M +D +L
Sbjct: 260 EWFLCLFSKTLPSETTLRVWDVLFNEGAKVLFHVALAIFKMREDDLL 306
>08_02_0654 -
19732679-19732837,19733234-19733479,19734470-19734667,
19735085-19735201,19735289-19735459,19735632-19735893,
19736205-19736353
Length = 433
Score = 64.9 bits (151), Expect = 1e-10
Identities = 57/251 (22%), Positives = 110/251 (43%), Gaps = 27/251 (10%)
Query: 44 AEWLHAMR-----LVARLPAGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQP 98
++W H +R + R+ G+P R +W L + D L+ +
Sbjct: 89 SDWKHYVRRNPHVVKRRIRKGIPDCLRGLVW------QLISGSRDLLLMNPGVYETLVIY 142
Query: 99 DDTELGAQILKDLHRTGCS-LFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAI 157
+ + +I++D+ RT S +F Q L VL AY+ ++++VGY QG LA +
Sbjct: 143 ETSASELEIIRDISRTFPSHIFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGL 202
Query: 158 ILEVMDKSESDSLKVMIYLVEAVL---PEGYFADDLRGLSADMAAFXXXXXXXXXXXAHH 214
+L M SE D+ +++ L++ + EG + L + + F H
Sbjct: 203 LLLYM--SEEDAFWLLVALLKGAVHAPMEGLYQAGLPLVQQYLYQFEKLVLEQMPQLGQH 260
Query: 215 MDHLQRISDGGGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALA 274
++ + + P ++ QWF+T+++ P LR+WD+ L +G +V+ LA
Sbjct: 261 F--IEEMIN--------PSMYASQWFITVFSYSFPFHLTLRVWDVFLYEGIKVVFQVGLA 310
Query: 275 IWDMLQDRILS 285
+ D +++
Sbjct: 311 LLRFCHDELVN 321
>03_02_0596 +
9714022-9714065,9714799-9714868,9714978-9715883,
9715973-9716146,9716260-9716373,9716975-9717033,
9717170-9717236,9717305-9717356,9718070-9718488,
9718786-9718847,9719305-9719374,9719730-9719831,
9719933-9720063,9720492-9720606,9720792-9720827
Length = 806
Score = 46.0 bits (104), Expect = 7e-05
Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query: 106 QILKDLHRTGCSLFCG--AEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMD 163
QI KDL RT F G A + + LRR+L AYAR N VGYCQ N A + L M
Sbjct: 395 QIEKDLPRT----FPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFM- 449
Query: 164 KSESDSLKVMIYLVEAVLPEGYFADDL 190
E + ++ +++ +GY+ +++
Sbjct: 450 -PEEHAFWALVGVIDEYF-DGYYTEEM 474
>07_03_0657 +
20362266-20362488,20362576-20362698,20362779-20362867,
20363016-20363121,20363211-20363308,20363717-20363986,
20364310-20364393,20364579-20364599
Length = 337
Score = 38.7 bits (86), Expect = 0.010
Identities = 35/138 (25%), Positives = 63/138 (45%), Gaps = 11/138 (7%)
Query: 123 EGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLP 182
E +EN + L +L YA +K+VGYCQG + L + ++ V+ K E+D+ L+ +
Sbjct: 89 ENKENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMI-VLLKDEADAFWCFEKLMRRLRG 147
Query: 183 EGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLT 242
D G+ A+ + H DHL+ + GGG +F + F+
Sbjct: 148 NFKCTDQSVGV-ANQLQYLASIIQVLDPKLH--DHLEIL--GGG-----DYLFAFRMFMV 197
Query: 243 LYATWLPRESLLRIWDLI 260
L+ + L +W+++
Sbjct: 198 LFRREVSFGDSLYLWEMM 215
>11_06_0222 -
21413676-21413696,21413813-21413896,21414042-21414305,
21414495-21414592,21414691-21414796,21414872-21414960,
21415048-21415170,21415379-21415566,21416069-21416172,
21416743-21416838,21417061-21417159
Length = 423
Score = 37.1 bits (82), Expect = 0.031
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 11/138 (7%)
Query: 123 EGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLP 182
E +EN + L +L YA +KE+GYCQG + L + ++ V+ E+D+ L+ +
Sbjct: 177 ENKENLSKLWDILAVYAWIDKEIGYCQGMSDLCSPMI-VLLNDEADAFWCFERLMRRL-- 233
Query: 183 EGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLT 242
G F + + + H DHL+ + GGG +F + F+
Sbjct: 234 RGNFRCTQQSVGVENQLQHLASIIQVLDPKLH-DHLETL--GGG-----DYLFAFRMFMV 285
Query: 243 LYATWLPRESLLRIWDLI 260
L+ L L +W+++
Sbjct: 286 LFRRELSFGDSLYLWEMM 303
>02_05_0483 -
29391929-29392256,29393048-29393148,29393640-29393834,
29394124-29394240,29394376-29394447,29394840-29394950,
29395029-29395127,29395991-29396047,29396607-29397008,
29397249-29397303,29397725-29397809,29398023-29398130,
29398229-29398295,29398717-29398875,29399277-29399405
Length = 694
Score = 36.7 bits (81), Expect = 0.041
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 109 KDLHRTGCSL-FCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSES 167
KD+ RT S+ + + +N +LR +LL Y+ +N ++GYCQ + + + S
Sbjct: 446 KDVVRTDRSVPYYEGDDNQNVLVLRDILLTYSFYNFDLGYCQVSLFVCSCSERSFFQGMS 505
Query: 168 DSLKVMIYLVE 178
D L ++Y++E
Sbjct: 506 DFLAPILYVME 516
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 36.3 bits (80), Expect = 0.054
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 100 DTELGAQILKDLHRTGCSL-FCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAII 158
++E+ QI +D+ RT + F A+ NQ LRRVL+ +++ N + Y QG N + A +
Sbjct: 222 ESEILEQIDRDVKRTHPEMPFFSAKA--NQESLRRVLIIFSKLNPTIRYVQGMNEVLAPL 279
Query: 159 LEVMDKSESDS 169
V K++ D+
Sbjct: 280 FYVF-KNDPDT 289
>02_05_1171 +
34672997-34673122,34673500-34673595,34674126-34674229,
34674303-34674502,34674643-34674765,34674910-34674998,
34675579-34675642,34675906-34676049,34676173-34676270,
34676479-34676724,34676826-34676909,34677011-34677022
Length = 461
Score = 35.9 bits (79), Expect = 0.071
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 106 QILKDLHRTGCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKS 165
QI D++RT L E +EN A L +L Y+ +K++GYCQG + L + + ++ +
Sbjct: 174 QIGLDVNRTDRQLVY-YESQENLARLWDILAVYSWVDKDIGYCQGMSDLCS-PMSILLEH 231
Query: 166 ESDS 169
E+D+
Sbjct: 232 EADA 235
>08_02_1480 +
27401923-27402158,27402847-27402982,27403119-27403168,
27403810-27403813,27404394-27404494,27405084-27406305
Length = 582
Score = 35.5 bits (78), Expect = 0.094
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 129 AMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDK 164
A L VL AYA ++ E+GYCQG + L + I+ VM++
Sbjct: 378 ARLVAVLEAYALFDPEIGYCQGMSDLLSPIIVVMEE 413
>10_08_0639 +
19505934-19506088,19506584-19506633,19508153-19508893,
19509762-19509922
Length = 368
Score = 34.7 bits (76), Expect = 0.16
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 129 AMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMD 163
A L +L AYA ++ E+GYCQG + L A +L V++
Sbjct: 114 ARLVPILEAYAIYDPEIGYCQGMSDLLAPLLAVLE 148
>05_05_0214 + 23319507-23321540
Length = 677
Score = 33.1 bits (72), Expect = 0.50
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 265 NEVLLLTALAIWDMLQDRILSARSADEFYSCMGGGAGAVWEAGDSLVARVVAFGS 319
N V L L+I D + RI+ A A E C G+GA W A ++ A V++ S
Sbjct: 437 NAVTALLNLSILDANKKRIMHAEGAVEAI-CHAMGSGATWRAKENAAATVLSLAS 490
>01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365
Length = 550
Score = 32.3 bits (70), Expect = 0.88
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 246 TWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRILSARSADEFYSCM----GGGAG 301
T PRE +WD+I L + L LA++ L+ R S R D+ CM GG G
Sbjct: 407 TETPREGTSELWDVINLTDDNHPLHVHLALFVALEQR--SLRDVDDLKECMMARGSGGGG 464
Query: 302 A 302
A
Sbjct: 465 A 465
>08_02_1264 +
25706009-25706148,25706613-25706716,25707108-25707284,
25707775-25709708,25709781-25709867,25710058-25710091,
25710293-25710381,25710522-25710674
Length = 905
Score = 31.9 bits (69), Expect = 1.2
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 128 QAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVM 162
QAMLRR+LL + + E GY QG + L A ++ V+
Sbjct: 119 QAMLRRILLMWCLQHPEHGYRQGMHELLAPLVYVL 153
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 31.5 bits (68), Expect = 1.5
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 100 DTELGAQILKDLHRTGCSL--FCG--AEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLA 155
++E QI +D+ RT + F G ++ NQ L+R+L +A+ N + Y QG N +
Sbjct: 223 ESETIEQIDRDVKRTHPEMQFFNGDSSDALSNQESLKRILTIFAKLNPGIRYVQGMNEVL 282
Query: 156 AIILEVMDKSESDS 169
A + V ++
Sbjct: 283 APLYYVFKNDPEEN 296
>03_01_0216 -
1700223-1700666,1700749-1700860,1701534-1701837,
1702358-1702426,1702543-1702657,1702740-1702811,
1702918-1703016,1703148-1703219,1703394-1703465,
1704940-1705154,1705277-1705495,1705792-1707076,
1707270-1707398
Length = 1068
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 242 TLYATW-LPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDR 282
TL+ +W LPRE L ++WDL D + +L L I L +R
Sbjct: 462 TLFLSWRLPREILKQVWDLSDQDNDGMLSLREFCIALYLMER 503
>04_04_1496 + 33986938-33987225,33988545-33988664
Length = 135
Score = 30.7 bits (66), Expect = 2.7
Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 281 DRILSARSADEFYSCMGGGAGAVWEAGDSLVARVVAFGSAPELPRLRSL 329
D ++ +AD S MG GA A EAGDS+ A A S+ RLR L
Sbjct: 17 DPVVGMAAAD---SAMGTGAAADLEAGDSVAADPPARPSSRSYARLRGL 62
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 30.3 bits (65), Expect = 3.5
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 106 QILKDLHRTGCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGF-NMLAAIILEVMDK 164
+I+ D+ RT L E R N A + +L YA + GYCQG ++L+ ++ D
Sbjct: 392 RIVVDVVRTDSHLDFYGESR-NMARMSDILAVYAWVDPSTGYCQGMSDLLSPFVVLYEDD 450
Query: 165 SES 167
+++
Sbjct: 451 ADA 453
>06_03_1011 -
26882011-26882157,26882576-26884248,26884607-26884783,
26885313-26885416,26885896-26886032
Length = 745
Score = 29.9 bits (64), Expect = 4.7
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 128 QAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVM 162
Q+ML R+LL ++ E+GY QG + L A +L V+
Sbjct: 118 QSMLGRILLVWSLRYPELGYKQGMHELLAPLLYVL 152
>06_03_1144 -
27980216-27980896,27981682-27982048,27983499-27983644,
27983872-27984111
Length = 477
Score = 29.5 bits (63), Expect = 6.2
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 280 QDRILSARSADEFYSCMGGGAGAVWEA----GDSLVARVVAFGSAP 321
Q R+ S R+ F++ GGG GAV EA + RVV +G P
Sbjct: 300 QGRVASERTVLAFFAAGGGGGGAVREALLARWEGRDDRVVVYGRLP 345
>06_01_0868 -
6606913-6607000,6607516-6608010,6610313-6610761,
6610863-6610979,6611892-6612863
Length = 706
Score = 29.5 bits (63), Expect = 6.2
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 435 GVPTSPTSLTVNNLLLGKSAIVSSRGRRLGAPPGA 469
G P++P SL V L+ GK+ + + R A P A
Sbjct: 25 GSPSTPASLRVTKLVKGKAKVKAKASREKAAAPAA 59
>05_03_0436 + 14006683-14006863,14007618-14008036
Length = 199
Score = 29.1 bits (62), Expect = 8.2
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 216 DHLQRISDGGGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLL 270
DHLQ I D ++PPL D L L + E+L +++ +G+ V+LL
Sbjct: 110 DHLQSICDSSELKPPLADQVKRALDLPLPRAYKRMEALHYMFEYGQEEGHIVVLL 164
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.322 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,524,500
Number of Sequences: 37544
Number of extensions: 468065
Number of successful extensions: 1093
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1060
Number of HSP's gapped (non-prelim): 32
length of query: 480
length of database: 14,793,348
effective HSP length: 85
effective length of query: 395
effective length of database: 11,602,108
effective search space: 4582832660
effective search space used: 4582832660
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
- SilkBase 1999-2023 -