Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000310-TA|BGIBMGA000310-PA|IPR000195|RabGAP/TBC
(480 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36105| Best HMM Match : TBC (HMM E-Value=1.9e-09) 199 3e-51
SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8) 170 2e-42
SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.) 90 3e-18
SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.) 65 1e-10
SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12) 63 5e-10
SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 1e-08
SB_10583| Best HMM Match : TBC (HMM E-Value=6.89999e-42) 57 4e-08
SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28) 55 1e-07
SB_32178| Best HMM Match : TBC (HMM E-Value=3.2e-06) 50 4e-06
SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 1e-04
SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-04
SB_51958| Best HMM Match : TBC (HMM E-Value=0.00039) 39 0.008
SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.013
SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16) 38 0.024
SB_3397| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.054
SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11) 32 1.2
SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15) 32 1.2
SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.6
SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08) 30 4.7
>SB_36105| Best HMM Match : TBC (HMM E-Value=1.9e-09)
Length = 294
Score = 199 bits (486), Expect = 3e-51
Identities = 101/184 (54%), Positives = 130/184 (70%), Gaps = 14/184 (7%)
Query: 110 DLHRTGCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDS 169
DLHRTGC+ FCG + E +A L+RVLLAYARWNK VGYCQGFN++AA+IL+VMD+SE D+
Sbjct: 109 DLHRTGCAWFCGNDTPEERAALKRVLLAYARWNKSVGYCQGFNVIAALILQVMDRSEEDA 168
Query: 170 LK---------VMIYLVEAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHL-- 218
LK VMIY+++ VLP YF+++LR LS DMA + H+++L
Sbjct: 169 LKSLTTGKFPQVMIYVIDHVLPTNYFSNNLRALSVDMAVCRDLMRLKLPRLSRHLENLQA 228
Query: 219 QRISDGGG---IEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAI 275
Q + GG EPPL +VFTMQWFLTL+AT LP+E +LR+WD +LL+G+EVLL ALAI
Sbjct: 229 QATAHHGGTSVYEPPLINVFTMQWFLTLFATCLPQEIVLRVWDSVLLEGSEVLLRVALAI 288
Query: 276 WDML 279
W L
Sbjct: 289 WAKL 292
>SB_10197| Best HMM Match : Rho_N (HMM E-Value=1.8)
Length = 335
Score = 170 bits (413), Expect = 2e-42
Identities = 75/129 (58%), Positives = 97/129 (75%), Gaps = 2/129 (1%)
Query: 43 YAEWLHAMRLVARLPAGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTE 102
+ +WL A + +ARLP GVP +RK+LWL LAE + +DW + CF + PDD E
Sbjct: 209 FRQWLDAFKAIARLPQGVPYQWRKRLWLCLAENKVN--DLDWQKTVKFCFNERSNPDDDE 266
Query: 103 LGAQILKDLHRTGCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVM 162
LG+QI+KDLHRTGC+ FCG + E +A L+RVLLAYARWNK VGYCQGFN++AA+IL+VM
Sbjct: 267 LGSQIVKDLHRTGCAWFCGNDTPEERAALKRVLLAYARWNKSVGYCQGFNVIAALILQVM 326
Query: 163 DKSESDSLK 171
D+SE D+LK
Sbjct: 327 DRSEEDALK 335
>SB_22474| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 642
Score = 90.2 bits (214), Expect = 3e-18
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 12/155 (7%)
Query: 130 MLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGYFADD 189
MLR VL+AY+ N EVGYCQG N L AI + ++ E ++ ++ +VE ++P+ YF+
Sbjct: 419 MLRNVLMAYSWHNPEVGYCQGLNRLVAIAMLIL--KEEEAFWCLVAIVEHIMPKDYFSRT 476
Query: 190 LRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLYATWLP 249
L AD H +++ R+ + T WFLT++ P
Sbjct: 477 LLAAQADQRVLRDLLMEKLPRLYTHFENV-RVD---------LSLITFNWFLTVFIDSFP 526
Query: 250 RESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
+++LR+WD L +GN+VL ALA++ M ++ +L
Sbjct: 527 IQTILRVWDTFLYEGNKVLFRYALAVFKMNEEELL 561
>SB_54100| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3287
Score = 65.3 bits (152), Expect = 1e-10
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 11/226 (4%)
Query: 51 RLVARLPAGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTELGAQILKD 110
+LV + G+P+ R ++W +A + VD + + F + + I+ D
Sbjct: 56 QLVQLVRKGIPEPLRGQVWQMMAGLSENDELVD---SYKHLFTKESPTEQV-----IVWD 107
Query: 111 LHRT-GCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDS 169
+HRT + G E Q L ++ AY+ +++EVGYCQG + A++L + E +
Sbjct: 108 IHRTFPAHDYFKDSGGEGQEALYKISKAYSVYDEEVGYCQGLSFFIAVLL--LHMPEEQA 165
Query: 170 LKVMIYLVEAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEP 229
V++ ++ A F +D + L D + +
Sbjct: 166 FAVLVKIMSAYGLREVFRNDFQLLHLKFYQLERMIEANNITTVIFQDSMPDLFSHFQHNN 225
Query: 230 PLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAI 275
++ QWFLT++ P + I DLIL +G V+ ALA+
Sbjct: 226 VEAHMYASQWFLTMFTARFPLPMVYSIMDLILCEGTHVIFQVALAL 271
>SB_48859| Best HMM Match : TBC (HMM E-Value=7.1e-12)
Length = 660
Score = 62.9 bits (146), Expect = 5e-10
Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 12/155 (7%)
Query: 130 MLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGYFADD 189
+L +L AY + +VGY QG + +AA++L ++ D+ L+ +F D
Sbjct: 459 VLHSILGAYTCYRPDVGYVQGMSFIAAVLL--LNLEPPDAFISFANLLNKPCQLAFFRVD 516
Query: 190 LRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLYATWLP 249
+ A A F H H E PD++ + W TL++ LP
Sbjct: 517 HPMMKAYFATFEILLSEFLNKLHEHFHH----------ESFSPDMYLIDWIFTLFSKSLP 566
Query: 250 RESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
+ R+WD+ DG++ L TAL I QD +L
Sbjct: 567 LDVACRVWDVFCRDGDDFLFRTALGILKFYQDDLL 601
>SB_31094| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1183
Score = 58.4 bits (135), Expect = 1e-08
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 24/213 (11%)
Query: 59 GVPQHFRKKLWLTLA---ERNLTARGVDWLVAERACFRGTAQPDDTELGAQILKDLHRTG 115
G+P + R ++WL + T G + E+ + + D+ E +DLHR+
Sbjct: 420 GIPDNLRAEIWLIFSGAINEIETHPGYYVSLVEQCEGKSSLAFDEIE------RDLHRS- 472
Query: 116 CSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIY 175
+ LRRVL AYA N +GYCQ N++A+++L + +E + +++
Sbjct: 473 LPEHPAFQSDVGIGALRRVLTAYAWRNPSIGYCQAMNIVASVLL--LYCTEEQAFWLLVA 530
Query: 176 LVEAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVF 235
+ E +LP+ Y+ + G D F DHL + D + + ++
Sbjct: 531 VCERLLPD-YYNTKVVGALVDQGVFEDLT----------RDHLPELYDHLK-DLGILNMI 578
Query: 236 TMQWFLTLYATWLPRESLLRIWDLILLDGNEVL 268
++ WFLTL+ + +P + I D DG +VL
Sbjct: 579 SLSWFLTLFLSVMPFVCAVNIIDCFFYDGAKVL 611
>SB_10583| Best HMM Match : TBC (HMM E-Value=6.89999e-42)
Length = 297
Score = 56.8 bits (131), Expect = 4e-08
Identities = 23/66 (34%), Positives = 44/66 (66%)
Query: 231 LPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRILSARSAD 290
L ++F+ +WF+ LY LP E++LRIWD + +G+++LL A+ + + QD++L+A+
Sbjct: 231 LVNIFSTKWFICLYIDVLPVETVLRIWDSLFYEGSKILLRVAITLLALHQDKLLAAKDFP 290
Query: 291 EFYSCM 296
+ + M
Sbjct: 291 QLCNVM 296
Score = 53.2 bits (122), Expect = 4e-07
Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 107 ILKDLHRTGC-SLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKS 165
+ D+ RT +++ G+ + L+ +L+AYA N ++GYCQG N +A ++L ++ KS
Sbjct: 136 VFTDIDRTFPENIYFGSSSDSLKQKLKNILVAYAVHNPKIGYCQGLNYIAGLLLLII-KS 194
Query: 166 ESDSLKVMIYLVEAVLPEGYFADDLRGLSAD 196
E + ++ ++ LP+ Y+A D+ GL +
Sbjct: 195 EEPAFWLLEAMMMKRLPD-YYAKDMMGLQVE 224
>SB_26950| Best HMM Match : TBC (HMM E-Value=5.2e-28)
Length = 998
Score = 54.8 bits (126), Expect = 1e-07
Identities = 60/229 (26%), Positives = 95/229 (41%), Gaps = 15/229 (6%)
Query: 58 AGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTELGAQILKDLHRT-GC 116
AGVP+ R ++W LA++ +A + I DL RT
Sbjct: 577 AGVPKDKRGEIWEFLAKQYSVRSPASKDAFWKAGSYEEMRDGSCNHQHSIFIDLGRTFPR 636
Query: 117 SLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYL 176
+ ++ Q L +L AY+ + +VGYCQG + +A I+L M E+ + VM +L
Sbjct: 637 HPYFTSQFGPGQLSLFNLLKAYSVLDTDVGYCQGLSFVAGILL--MHMEEAKAFDVMRHL 694
Query: 177 VEAVLPEGYFADDLRGL-SADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVF 235
+ FA DLR L +DM + L + I P L +
Sbjct: 695 L--------FALDLRKLYKSDMTELQIQFYVLSRLLHDYHTPLYEFLEELDITPTL---Y 743
Query: 236 TMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
WFLTL+A+ P ++R+ D+I L G V L + ++ I+
Sbjct: 744 AAAWFLTLFASQFPVGFVVRVMDMIFLQGITVCFKVMLLLLSRCKEGIM 792
>SB_32178| Best HMM Match : TBC (HMM E-Value=3.2e-06)
Length = 759
Score = 50.0 bits (114), Expect = 4e-06
Identities = 47/183 (25%), Positives = 75/183 (40%), Gaps = 16/183 (8%)
Query: 152 NMLAAIILEVMDKSESDSLKVMIYLVEAVLPEGYFADDLRGLSADMAAFXXXXXXXXXXX 211
N L + L M E ++ ++ +V+ L +GYF + L G AD
Sbjct: 2 NFLVGLFLLFM--GEEEAFWSLVAVVQVYL-KGYFDEFLIGAQADQEVLKELVCEKLPAL 58
Query: 212 AHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLT 271
H + G++ L V T W +T+Y +P E+ LRIWD L +G EVL
Sbjct: 59 HAHFKYY-------GVD--LSTV-TFNWLITIYLDAVPFETGLRIWDCFLYEGREVLFRV 108
Query: 272 ALAIWDMLQDRILSARSADEFYSCMGGGAGAVWEAGDSLVA---RVVAFGSAPELPRLRS 328
A+ + + Q +L E M A ++ +A + F S +L ++S
Sbjct: 109 AIGLLKLQQRALLQLSGPLEIMQYMKRAARVTYDVDRLFMASFDEISTFPSNADLDVMQS 168
Query: 329 LHR 331
HR
Sbjct: 169 KHR 171
>SB_7605| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 667
Score = 45.2 bits (102), Expect = 1e-04
Identities = 17/55 (30%), Positives = 32/55 (58%)
Query: 231 LPDVFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRILS 285
+P+++ + WFLT++ P + +WD +LL + L +AI L+D++LS
Sbjct: 433 IPELYAIPWFLTMFCHVFPLHKIYHLWDTLLLGNSSFPLCIGVAILQQLRDQLLS 487
>SB_18815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 44.8 bits (101), Expect = 2e-04
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 11/142 (7%)
Query: 51 RLVARLPAGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTELGAQILKD 110
+LV + G+P+ R ++W +A + VD + + F + + I+ D
Sbjct: 402 QLVQLVRKGIPEPLRGQVWQMMAGLSENDELVD---SYKHLFTKESPTEQV-----IVWD 453
Query: 111 LHRT-GCSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDS 169
+HRT + G E Q L ++ AY+ +++EVGYCQG + A++L + E +
Sbjct: 454 IHRTFPAHDYFKDSGGEGQEALYKISKAYSVYDEEVGYCQGLSFFIAVLL--LHMPEEQA 511
Query: 170 LKVMIYLVEAVLPEGYFADDLR 191
V++ ++ A F +D +
Sbjct: 512 FAVLVKIMSAYGLREVFRNDFQ 533
>SB_51958| Best HMM Match : TBC (HMM E-Value=0.00039)
Length = 491
Score = 39.1 bits (87), Expect = 0.008
Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 109 KDLHRTG-CSLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVM 162
KD+ RT F +G N +LR +L+ YA ++++VGY QG N + + L V+
Sbjct: 246 KDVPRTDRAHPFFKGQGNPNLIVLRDILITYAAYHQDVGYAQGMNDILSRFLVVL 300
>SB_17043| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 556
Score = 38.3 bits (85), Expect = 0.013
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 234 VFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAIWDMLQDRIL 284
++ WFLTL+A+ P + R+ D+ + +G + L AI M Q+ +L
Sbjct: 255 MYASSWFLTLFASVFPLNAAFRVMDMFISEGRDGLFRIIFAILSMGQEELL 305
>SB_42698| Best HMM Match : SH3_1 (HMM E-Value=5.2e-16)
Length = 505
Score = 37.5 bits (83), Expect = 0.024
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 234 VFTMQWFLTLYATWLPRESLLRIWDLILLDGNEVLLLTALAI 275
+ T+ WFLT +A+ + + LLRIWD+ +G+ L L +
Sbjct: 4 LITLHWFLTAFASVVHTKILLRIWDIYFYEGSVTLFRATLGM 45
>SB_3397| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 317
Score = 36.3 bits (80), Expect = 0.054
Identities = 25/107 (23%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 48 HAMRLVARLPAGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTELGAQI 107
H+ +L + +G+P R +W+ ++ + ++ + R ++ +++ QI
Sbjct: 214 HSDKLRELVCSGIPHSMRAPIWMRIS--GALQKKINAEFTYKQVVRASSD-ENSPASKQI 270
Query: 108 LKDLHRTGCSLFCGAEGRENQAM-LRRVLLAYARWNKEVGYCQGFNM 153
KDL RT + C + + +RR+L + A ++GYCQG M
Sbjct: 271 EKDLLRTMPNNACFSTPTSTGLLRMRRILRSLAWLYPDIGYCQGMGM 317
>SB_55304| Best HMM Match : Collagen (HMM E-Value=0.11)
Length = 853
Score = 31.9 bits (69), Expect = 1.2
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 132 RRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEA 179
R +LL YA N E+GY QG + L + +L + + E D+ L+EA
Sbjct: 791 RSILLNYAIHNPEIGYSQGMSDLLSPVLAAL-QDEVDAFWCFAALMEA 837
>SB_44623| Best HMM Match : RUN (HMM E-Value=1.6e-15)
Length = 1277
Score = 31.9 bits (69), Expect = 1.2
Identities = 40/164 (24%), Positives = 65/164 (39%), Gaps = 17/164 (10%)
Query: 125 RENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVEAVLPEG 184
+EN LR V+ +Y VGY QG L A +L + D ES + + L++ +
Sbjct: 969 QENLLKLRNVISSYVWTTLNVGYVQGMCDLVAPLLVIFD-DESITYSCFVQLMDRM--NN 1025
Query: 185 YFADDLRGLSADMAAFXXXXXXXXXXXAHHMDHLQRISDGGGIEPPLPDVFTMQWFLTLY 244
F G + D+ F +HLQ+ D F +WFL +
Sbjct: 1026 NFP---HGGAMDL-HFSNMRSLIQVLDPEMFEHLQQNGDLTHF------YFCYRWFLLDF 1075
Query: 245 ATWLPRESLLRIWDLIL----LDGNEVLLLTALAIWDMLQDRIL 284
L + + ++W+ I + +L ALA+ +D IL
Sbjct: 1076 KRELLYDDVFKVWETIWAARHCTTDHFVLFIALALLQFYRDIIL 1119
>SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 30.3 bits (65), Expect = 3.6
Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 16/121 (13%)
Query: 46 WLHAMRLVARLPAGVPQHFRKKLWLTLAERNLTARGVDWLVAERACFRGTAQPDDTE-LG 104
W H + + P + Q R+K L A+ R DW+ + P D E +
Sbjct: 203 WAHLLHV---FPPDLTQDEREKFLLMKAQVYWHLRS-DWMARD---------PLDIESVS 249
Query: 105 AQILKDLHRTGC--SLFCGAEGRENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVM 162
+ KD+ RT F + + L +L+ YA N +V Y QG + LA+ IL VM
Sbjct: 250 HMVQKDVVRTDRVHPYFDVTDDHPHIRSLFNILVTYALANPDVSYVQGMSDLASPILVVM 309
Query: 163 D 163
+
Sbjct: 310 N 310
>SB_58221| Best HMM Match : TBC (HMM E-Value=2.9e-08)
Length = 580
Score = 29.9 bits (64), Expect = 4.7
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 126 ENQAMLRRVLLAYARWNKEVGYCQGFNMLAAIILEVMDKSESDSLKVMIYLVE 178
+N L VL+ Y +N ++GY QG + L + +L +++ +E D+ + L+E
Sbjct: 280 DNVRKLYDVLMTYCMYNFDLGYVQGMSDLLSPVLFLVE-NEVDAFWCFVGLME 331
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.136 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,860,395
Number of Sequences: 59808
Number of extensions: 428973
Number of successful extensions: 685
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 655
Number of HSP's gapped (non-prelim): 25
length of query: 480
length of database: 16,821,457
effective HSP length: 85
effective length of query: 395
effective length of database: 11,737,777
effective search space: 4636421915
effective search space used: 4636421915
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)
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