GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000309-TA|BGIBMGA000309-PA|IPR001359|Synapsin
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    29   0.84 
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   3.4  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    26   5.9  
SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase Bgl2|Schizosacch...    26   7.9  

>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 29.1 bits (62), Expect = 0.84
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 18  HSGVAKVKVDSLADFQDIAGVVAMLGTYCTVEPYI--DAKYDIHIQKIGTNYKAFMRKSI 75
           H   A V  D+  +F ++    A++  +   E  +  D   DIHI K+  ++    R SI
Sbjct: 244 HREAAYVVEDAFREFTNLQQQRALICEFYGPEFQVFKDRTQDIHIDKLLIDHPE-KRPSI 302

Query: 76  SGN-WKTNQGSAMLEAIGMNDRYKMWIDEVS 105
             N WKT +GS    +IG    ++  ++ ++
Sbjct: 303 MQNLWKTIEGSIAKGSIGFTMVHRAMLEFIN 333


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 70  FMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDE 103
           +++K+ SG+W  N    + + I M  + K W DE
Sbjct: 176 YVKKASSGSWGANDIITLEKEIAMFKKKKNWSDE 209


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 93  MNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIEL 131
           M + Y+++ D +SE+  G  +    L + KD R+  +EL
Sbjct: 361 MVNYYRLYEDSLSELLSGEIITEATLKIVKDRRKKFLEL 399


>SPAC26H5.08c |bgl2||glucan 1,3-beta-glucosidase
          Bgl2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 321

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 14 IGHAHSGVAKVKVDSLADFQDIAGVVAMLGTYCT 47
          + HA  G  K   D LADF+ +A    M+ TY T
Sbjct: 48 VKHA-DGTCKYTDDYLADFEVLAPYTNMIRTYAT 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 889,258
Number of Sequences: 5004
Number of extensions: 29748
Number of successful extensions: 78
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 75
Number of HSP's gapped (non-prelim): 4
length of query: 310
length of database: 2,362,478
effective HSP length: 73
effective length of query: 237
effective length of database: 1,997,186
effective search space: 473333082
effective search space used: 473333082
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)