GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000309-TA|BGIBMGA000309-PA|IPR001359|Synapsin
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     31   1.6  
12_02_0034 - 12539201-12540439                                         30   2.7  
11_06_0689 - 26294961-26294976,26295271-26295414,26295506-262959...    30   2.7  
10_03_0003 + 6865111-6865223,6867322-6867796                           30   2.7  
01_03_0043 - 11919597-11920364                                         29   4.8  
05_01_0105 + 696604-696846,696880-697989                               28   8.3  

>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 17/75 (22%), Positives = 34/75 (45%)

Query: 60  IQKIGTNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELV 119
           ++ +   Y+  +   I+ +      +++L  I  ND YK+   E+ E     +  AL+  
Sbjct: 147 LRALPEKYETLVTMLINSDMSRMTPASLLGKINTNDMYKLKKKEMEEASPSKQCIALQAE 206

Query: 120 VGKDGREHIIELNDS 134
           V   G+  + E ND+
Sbjct: 207 VEDKGKSKVNEANDN 221


>12_02_0034 - 12539201-12540439
          Length = 412

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/68 (25%), Positives = 32/68 (47%)

Query: 67  YKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGRE 126
           Y+  +   I+ +      +++L  I  ND YK+   E+ E+    +  AL+  V   G+ 
Sbjct: 166 YETLVTMLINSDMSRMTPASLLGKINTNDIYKLKKKEMEEVSPSKKCIALQAEVEDKGKG 225

Query: 127 HIIELNDS 134
            + E ND+
Sbjct: 226 KVNEANDN 233


>11_06_0689 -
           26294961-26294976,26295271-26295414,26295506-26295909,
           26296112-26296261,26296334-26296497,26296526-26296836,
           26296948-26297084,26297276-26297416,26297821-26297867,
           26297977-26298072,26298168-26298249,26298332-26298472,
           26298607-26298702,26298809-26298877,26298959-26299030,
           26299201-26299368,26299577-26299711,26299792-26299958,
           26301213-26301369
          Length = 898

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 14  IGHAHSGVAKVKVDSLADFQDIAGVVAMLGTYCTVEPYIDAKYDIHI---QKIGTNYKA 69
           + HA SG  KV  ++   +  I  +   +  YC V P++  K    +   + +G NY+A
Sbjct: 369 LSHAASGYHKVLEENRKLYNQIQDLRGNIRVYCRVRPFLPGKSGPKVLTEEGLGVNYRA 427


>10_03_0003 + 6865111-6865223,6867322-6867796
          Length = 195

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/74 (22%), Positives = 33/74 (44%)

Query: 60  IQKIGTNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELV 119
           ++ +   Y+  +   I+ +      +++L  I  ND YK+   E+ E     +  AL+  
Sbjct: 50  LRTLPEKYETLVTMLINSDMSRMTPASLLGKINTNDMYKLKKKEMEEASPSKKCIALQAE 109

Query: 120 VGKDGREHIIELND 133
           V   G+  + E ND
Sbjct: 110 VEDKGKSKVNEAND 123


>01_03_0043 - 11919597-11920364
          Length = 255

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 16/74 (21%), Positives = 35/74 (47%)

Query: 60  IQKIGTNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELV 119
           ++ +   Y+  +   I+ +    + +++L  I  ND YK+   E+ E     +  AL+  
Sbjct: 159 LRALPEKYETLVTMLINSDMSRMKPASLLGKINTNDMYKLKKKEMDEASPSKKCIALQAE 218

Query: 120 VGKDGREHIIELND 133
           V   G+  + E+N+
Sbjct: 219 VEDKGKGKVNEVNE 232


>05_01_0105 + 696604-696846,696880-697989
          Length = 450

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 16/74 (21%), Positives = 34/74 (45%)

Query: 60  IQKIGTNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELV 119
           ++ +   Y+  +   I+ +      +++L  I  ND YK+   E+ E     +  AL+  
Sbjct: 148 LRALPEKYETLVTMLINSDMSRMTPASLLGKINTNDMYKLKKKEMEEASPSKKCIALQAE 207

Query: 120 VGKDGREHIIELND 133
           V   G+  + E+N+
Sbjct: 208 VEDKGKGKVNEVNE 221


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,780,637
Number of Sequences: 37544
Number of extensions: 196103
Number of successful extensions: 429
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 6
length of query: 310
length of database: 14,793,348
effective HSP length: 82
effective length of query: 228
effective length of database: 11,714,740
effective search space: 2670960720
effective search space used: 2670960720
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)