GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000309-TA|BGIBMGA000309-PA|IPR001359|Synapsin
         (310 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31202| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.30 
SB_8941| Best HMM Match : VWA (HMM E-Value=0)                          29   4.8  
SB_2014| Best HMM Match : MAM (HMM E-Value=0)                          29   6.4  

>SB_31202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 33.1 bits (72), Expect = 0.30
 Identities = 13/43 (30%), Positives = 28/43 (65%)

Query: 128 IIELNDSATSFMGDSQEEDRRNLAELVLQRMQAVCRPGLTKTT 170
           + ++ D+A     D+ +ED++ +A+LV+Q+M+A   P +  T+
Sbjct: 3   MFKVTDTAMRLFNDTVDEDQQRIADLVIQKMEAHYPPTIQATS 45


>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2180

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 74  SISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIELND 133
           S+ GNW T+    + EA     R ++ +  V    GG     L  VV K G +++   N 
Sbjct: 335 SVRGNWDTDNFGFIQEASEALKRARVQLLAVEIGSGGENPSILASVVEKPG-DYV---NM 390

Query: 134 SATSFMGDSQEEDRRNLAELV 154
           S TS   DSQ +    L EL+
Sbjct: 391 SPTSAPQDSQRKISGRLCELI 411


>SB_2014| Best HMM Match : MAM (HMM E-Value=0)
          Length = 2282

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)

Query: 99   MWIDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATS 137
            +W+  +   FG + V A  LVV +D R H + L + A S
Sbjct: 1782 IWVLGIFAFFGNIFVVAYRLVVREDNRVHSLLLTNLAIS 1820


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,533,434
Number of Sequences: 59808
Number of extensions: 212508
Number of successful extensions: 428
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 4
length of query: 310
length of database: 16,821,457
effective HSP length: 82
effective length of query: 228
effective length of database: 11,917,201
effective search space: 2717121828
effective search space used: 2717121828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)