GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000309-TA|BGIBMGA000309-PA|IPR001359|Synapsin
         (310 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...   128   4e-30
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...   128   4e-30
AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...   128   4e-30
U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory ...    31   0.79 
U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated p...    30   2.4  
U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated p...    30   2.4  
U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated p...    30   2.4  
AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucle...    30   2.4  
AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucle...    30   2.4  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score =  128 bits (310), Expect = 4e-30
 Identities = 56/156 (35%), Positives = 105/156 (67%), Gaps = 5/156 (3%)

Query: 8   FPVVIKIGHAHSGVAKVKVDSLADFQDIAGVVAMLG---TYCTVEPYIDAKYDIHIQKIG 64
           +P+V+ +     G+ K+KV++  +  D+ G++ ++    T   V+P++DAKYD+HIQKIG
Sbjct: 146 YPMVVSVNEGFQGIGKIKVNNHEELCDVEGMLQIMSKGDTEVEVQPFVDAKYDLHIQKIG 205

Query: 65  TNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDG 124
             YK F+R+ I  +WK+N GS++LE I   +R+K ++  +++  G + +C+++++V K+G
Sbjct: 206 HEYKTFIRRGICKHWKSNVGSSVLEQISTCERHKKYLKAITDHVGPMHICSIDILVSKEG 265

Query: 125 REHIIELNDSATSFMGDSQEEDRRNLAELVLQRMQA 160
           RE + ++ND   ++ G+S E+DRR  A L+L+ + A
Sbjct: 266 REFVHDVND-VIAYFGESAEDDRR-AASLLLRALVA 299



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 293 EDTMKNLRKTFAGIFGD 309
           +DTM  L++TFAG FG+
Sbjct: 385 DDTMGQLKRTFAGFFGE 401


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score =  128 bits (310), Expect = 4e-30
 Identities = 56/156 (35%), Positives = 105/156 (67%), Gaps = 5/156 (3%)

Query: 8   FPVVIKIGHAHSGVAKVKVDSLADFQDIAGVVAMLG---TYCTVEPYIDAKYDIHIQKIG 64
           +P+V+ +     G+ K+KV++  +  D+ G++ ++    T   V+P++DAKYD+HIQKIG
Sbjct: 146 YPMVVSVNEGFQGIGKIKVNNHEELCDVEGMLQIMSKGDTEVEVQPFVDAKYDLHIQKIG 205

Query: 65  TNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDG 124
             YK F+R+ I  +WK+N GS++LE I   +R+K ++  +++  G + +C+++++V K+G
Sbjct: 206 HEYKTFIRRGICKHWKSNVGSSVLEQISTCERHKKYLKAITDHVGPMHICSIDILVSKEG 265

Query: 125 REHIIELNDSATSFMGDSQEEDRRNLAELVLQRMQA 160
           RE + ++ND   ++ G+S E+DRR  A L+L+ + A
Sbjct: 266 REFVHDVND-VIAYFGESAEDDRR-AASLLLRALVA 299



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 293 EDTMKNLRKTFAGIFGD 309
           +DTM  L++TFAG FG+
Sbjct: 385 DDTMGQLKRTFAGFFGE 401


>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score =  128 bits (310), Expect = 4e-30
 Identities = 56/156 (35%), Positives = 105/156 (67%), Gaps = 5/156 (3%)

Query: 8   FPVVIKIGHAHSGVAKVKVDSLADFQDIAGVVAMLG---TYCTVEPYIDAKYDIHIQKIG 64
           +P+V+ +     G+ K+KV++  +  D+ G++ ++    T   V+P++DAKYD+HIQKIG
Sbjct: 219 YPMVVSVNEGFQGIGKIKVNNHEELCDVEGMLQIMSKGDTEVEVQPFVDAKYDLHIQKIG 278

Query: 65  TNYKAFMRKSISGNWKTNQGSAMLEAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDG 124
             YK F+R+ I  +WK+N GS++LE I   +R+K ++  +++  G + +C+++++V K+G
Sbjct: 279 HEYKTFIRRGICKHWKSNVGSSVLEQISTCERHKKYLKAITDHVGPMHICSIDILVSKEG 338

Query: 125 REHIIELNDSATSFMGDSQEEDRRNLAELVLQRMQA 160
           RE + ++ND   ++ G+S E+DRR  A L+L+ + A
Sbjct: 339 REFVHDVND-VIAYFGESAEDDRR-AASLLLRALVA 372



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)

Query: 293 EDTMKNLRKTFAGIFGD 309
           +DTM  L++TFAG FG+
Sbjct: 458 DDTMGQLKRTFAGFFGE 474


>U64598-5|AAK39217.3|  638|Caenorhabditis elegans Mechanosensory
           abnormality protein18 protein.
          Length = 638

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 7/56 (12%)

Query: 28  SLADFQDIAGVVAMLGTYCTVEPYIDAKYDIHIQKIGTNYKAFMRKSISGNWKTNQ 83
           ++ DF+   G+   LG  CT+ PY+D K    I+ +G      + K +  NW+T Q
Sbjct: 379 NIKDFRQSFGMTE-LGGICTMSPYLDEK----IESVGNPLPGMLFKVV--NWETKQ 427


>U80436-7|AAC71109.1| 1638|Caenorhabditis elegans Uncoordinated
            protein 73, isoform b protein.
          Length = 1638

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 89   EAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATSFMGDSQE---E 145
            EA+G +  + +WID ++E++   E C     V K+ + H+I   D+ + F G  +    E
Sbjct: 1281 EAVGAS--FIVWIDLLNELY--TEYC-----VNKEQKNHVIATPDAVSFFTGIRERHGLE 1331

Query: 146  DRRNLAELVLQRMQAVCR 163
                +A L+++ +Q + R
Sbjct: 1332 INNEIASLLIKPVQRITR 1349


>U80436-5|AAT68892.1| 2140|Caenorhabditis elegans Uncoordinated
            protein 73, isoform f protein.
          Length = 2140

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 89   EAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATSFMGDSQE---E 145
            EA+G +  + +WID ++E++   E C     V K+ + H+I   D+ + F G  +    E
Sbjct: 1281 EAVGAS--FIVWIDLLNELY--TEYC-----VNKEQKNHVIATPDAVSFFTGIRERHGLE 1331

Query: 146  DRRNLAELVLQRMQAVCR 163
                +A L+++ +Q + R
Sbjct: 1332 INNEIASLLIKPVQRITR 1349


>U80436-1|AAC71108.1| 2488|Caenorhabditis elegans Uncoordinated
            protein 73, isoform a protein.
          Length = 2488

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 89   EAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATSFMGDSQE---E 145
            EA+G +  + +WID ++E++   E C     V K+ + H+I   D+ + F G  +    E
Sbjct: 1281 EAVGAS--FIVWIDLLNELY--TEYC-----VNKEQKNHVIATPDAVSFFTGIRERHGLE 1331

Query: 146  DRRNLAELVLQRMQAVCR 163
                +A L+++ +Q + R
Sbjct: 1332 INNEIASLLIKPVQRITR 1349


>AF048835-1|AAC12932.1| 1638|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73B protein.
          Length = 1638

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 89   EAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATSFMGDSQE---E 145
            EA+G +  + +WID ++E++   E C     V K+ + H+I   D+ + F G  +    E
Sbjct: 1281 EAVGAS--FIVWIDLLNELY--TEYC-----VNKEQKNHVIATPDAVSFFTGIRERHGLE 1331

Query: 146  DRRNLAELVLQRMQAVCR 163
                +A L+++ +Q + R
Sbjct: 1332 INNEIASLLIKPVQRITR 1349


>AF048834-1|AAC12931.1| 2488|Caenorhabditis elegans guanine nucleotide
            exchange factorUNC-73A protein.
          Length = 2488

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 89   EAIGMNDRYKMWIDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATSFMGDSQE---E 145
            EA+G +  + +WID ++E++   E C     V K+ + H+I   D+ + F G  +    E
Sbjct: 1281 EAVGAS--FIVWIDLLNELY--TEYC-----VNKEQKNHVIATPDAVSFFTGIRERHGLE 1331

Query: 146  DRRNLAELVLQRMQAVCR 163
                +A L+++ +Q + R
Sbjct: 1332 INNEIASLLIKPVQRITR 1349


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 15  GHAHSGVAKVKVDSLADFQDIAGVVAMLGTYCTVEPYIDAK-YDIHIQKIGTNYKAFMRK 73
           G   SGV K K     D Q + G    +  YC    Y+DA  Y + +Q   T +   + K
Sbjct: 740 GSMDSGVEKQKCGIAKDMQQLVGRQKGIQGYCN-SCYLDATLYAMFVQT--TCFDFLLEK 796

Query: 74  SISGNWKTNQGSAML 88
           SI G+    Q   +L
Sbjct: 797 SIKGSETAQQFQKIL 811


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,849,749
Number of Sequences: 27539
Number of extensions: 163529
Number of successful extensions: 354
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 345
Number of HSP's gapped (non-prelim): 13
length of query: 310
length of database: 12,573,161
effective HSP length: 81
effective length of query: 229
effective length of database: 10,342,502
effective search space: 2368432958
effective search space used: 2368432958
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)