GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000309-TA|BGIBMGA000309-PA|IPR001359|Synapsin
         (310 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13430.1 68414.m01568 sulfotransferase family protein similar...    29   3.0  
At2g07690.1 68415.m00993 minichromosome maintenance family prote...    29   4.0  
At2g02560.1 68415.m00195 TIP120 protein, putative similar to TBP...    28   9.2  

>At1g13430.1 68414.m01568 sulfotransferase family protein similar to
           steroid sulfotransferase 3 GI:3420008 from (Brassica
           napus); contains Pfam profile PF00685: Sulfotransferase
           domain
          Length = 351

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 64  GTNYKAFMRKSISGNWKTNQGSAMLEAIGM 93
           G +YK + RK   G+WK+   S M+  I M
Sbjct: 309 GVDYKTYFRKGQVGDWKSYMTSEMVNKIDM 338


>At2g07690.1 68415.m00993 minichromosome maintenance family protein
           / MCM family protein similar to SP|P55862 DNA
           replication licensing factor MCM5 (CDC46 homolog)
           {Xenopus laevis}; contains Pfam profile PF00493:
           MCM2/3/5 family
          Length = 727

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 122 KDGREHIIELNDSATSFMGDSQEEDRRNLAELVLQRMQAVCRPGLTK 168
           K+   HII ++ SA  F  ++ +    N  +  +Q  +A C P L+K
Sbjct: 525 KEIASHIIRVHASANKFSDENTDSKEDNWLKRYIQYCRARCHPRLSK 571


>At2g02560.1 68415.m00195 TIP120 protein, putative similar to
           TBP-interacting protein TIP120 GI:1799570 from [Rattus
           norvegicus]
          Length = 1219

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 101 IDEVSEIFGGLEVCALELVVGKDGREHIIELNDSATSFMGDSQEEDRRNLAELVLQRMQA 160
           +D+V+    GL V  L  +V K G E I+E+ +     +   +++  R+ A + L+ + A
Sbjct: 57  LDDVAGDVSGLAVKCLAPLVKKVGEERIVEMTNKLCDKLLHGKDQ-HRDTASIALRTVVA 115

Query: 161 VCRPGL 166
              P L
Sbjct: 116 QIAPTL 121


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.135    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,725,804
Number of Sequences: 28952
Number of extensions: 161851
Number of successful extensions: 370
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 3
length of query: 310
length of database: 12,070,560
effective HSP length: 81
effective length of query: 229
effective length of database: 9,725,448
effective search space: 2227127592
effective search space used: 2227127592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)