GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000308-TA|BGIBMGA000308-PA|IPR001359|Synapsin
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    27   5.0  
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos...    26   6.7  

>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)

Query: 170 ASVGRGYNRDRCVTLLVVDDQNTDW 194
           A V  GY+ DR   L++VDD+ T W
Sbjct: 376 ALVNAGYSNDR---LILVDDEKTSW 397


>SPCC338.07c |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 729

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/49 (22%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 210 RVEQAEFRLFLIVEVTLDSREYNLRIKRPYKFEITKNPTPTKRVDTRQW 258
           ++E+A+  ++L+++   D+ +Y   ++R Y +E        K +D+ +W
Sbjct: 237 KMEEAKSTIYLLLDRNPDNHQYYYNLQRAYGYEDASG----KVLDSAEW 281


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,277,760
Number of Sequences: 5004
Number of extensions: 44092
Number of successful extensions: 93
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 93
Number of HSP's gapped (non-prelim): 2
length of query: 338
length of database: 2,362,478
effective HSP length: 73
effective length of query: 265
effective length of database: 1,997,186
effective search space: 529254290
effective search space used: 529254290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)