GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000308-TA|BGIBMGA000308-PA|IPR001359|Synapsin
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0946 - 29075600-29076229                                         29   4.0  
09_04_0204 - 15565684-15566223,15567272-15567678,15568143-155684...    29   5.3  
04_04_0372 + 24781572-24781612,24781696-24782413                       29   5.3  
05_01_0154 + 1020650-1022050,1022304-1022373,1022496-1022617,102...    29   7.1  
09_06_0367 + 22601881-22602097,22602212-22603254                       28   9.3  
08_02_1528 + 27666356-27667081                                         28   9.3  
06_02_0315 - 14230234-14232771                                         28   9.3  
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117...    28   9.3  

>03_05_0946 - 29075600-29076229
          Length = 209

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 127 GSRGTSAPSSPAKSRESLLQRVQ-SLTGAARDQGANLLGSVTSVASV 172
           G+ G+S P+  + SR   + RV+ SL  AAR+   + L S   VA+V
Sbjct: 74  GASGSSQPAGSSSSRAKKMDRVETSLKDAARELSLSKLKSGAVVAAV 120


>09_04_0204 -
           15565684-15566223,15567272-15567678,15568143-15568446,
           15568735-15570065,15570769-15570846,15570943-15571027
          Length = 914

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 8/99 (8%)

Query: 198 FRGRRLPGEWDIRVEQAEFRLFLIVEVT-LDSREYNLRIKRPYKF-EITKNPTP----TK 251
           FRG  L GE+D+R  Q EF  F I+ V    S+E      +   F ++ +N T       
Sbjct: 341 FRG--LSGEFDLRNRQREFSTFQIINVVGSRSKEIGFWTAKQGIFRQLNENKTTNINFVP 398

Query: 252 RVDTRQWPDFVLVRQNVRDAGADHRALLLGLKFGGVPSI 290
            +D   WP  V           + + L +G++  G P +
Sbjct: 399 DLDPVMWPGEVYTVPKGWQIPTNGKKLRVGVRTSGYPEL 437


>04_04_0372 + 24781572-24781612,24781696-24782413
          Length = 252

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 15/35 (42%), Positives = 20/35 (57%)

Query: 55  LRRFSSGDLQSECDEGEVDPYTGRAATTSQPKPQA 89
           LRR +  + +SE D+ E    T  A  TS+ KPQA
Sbjct: 213 LRRMALAESESEADDEEETTTTEAAEPTSRRKPQA 247


>05_01_0154 +
           1020650-1022050,1022304-1022373,1022496-1022617,
           1022753-1023031,1023402-1023779,1024079-1024188,
           1024394-1024622,1024725-1025303
          Length = 1055

 Score = 28.7 bits (61), Expect = 7.1
 Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 207 WDIRVEQAEFRLFLIVEVTLDSREYNLRIKRPYKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
           W   VE+ E RL +     L SRE   R++     E+ ++P PT      Q  D  LVR 
Sbjct: 24  WARGVEECEARLGVSASRGLSSREAAARLRAHGPNELAEHPGPTLLQLVAQQFDDTLVR- 82

Query: 267 NVRDAGADHRALLLGLKFGGV 287
            +  A A   AL L    G V
Sbjct: 83  ILLAAAAVSFALALSSSAGAV 103


>09_06_0367 + 22601881-22602097,22602212-22603254
          Length = 419

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 128 SRGTSAPSSPAKSRESLLQRVQSLTGAARDQGANLLGSVTSVASVGRGYNRDR 180
           S G S  SS +K +    +R  SL G++RD  +NL+  V  + +    Y   R
Sbjct: 29  SSGCSNSSSSSKKKNLASER--SLGGSSRDNNSNLVNLVNEIVAESVTYRHKR 79


>08_02_1528 + 27666356-27667081
          Length = 241

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 13/49 (26%), Positives = 24/49 (48%)

Query: 129 RGTSAPSSPAKSRESLLQRVQSLTGAARDQGANLLGSVTSVASVGRGYN 177
           R  SAPSSP  ++ ++ +++QSL          +   +   + +G  YN
Sbjct: 4   RSASAPSSPRSNKTNVEEQLQSLKATITSPAETIETMLDGFSRIGAVYN 52


>06_02_0315 - 14230234-14232771
          Length = 845

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 48  ARSSVEALRRFSSGDLQSECDEGEVDPYTGRAATTSQ 84
           A S+ EA  R   G L   C+ G+VDP    A  TS+
Sbjct: 390 AVSTKEAGCRECDGSLHDGCEAGQVDPLETEAVETSE 426


>05_05_0202 -
           23211342-23211385,23211493-23211579,23211666-23211779,
           23211886-23212111,23212222-23212401,23212511-23212654,
           23212818-23212979,23213093-23213296,23214109-23214156,
           23214601-23214846
          Length = 484

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)

Query: 295 SIYHFQDRPWVFGH 308
           S++HF DRPW + H
Sbjct: 74  SLFHFYDRPWAYRH 87


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,327,611
Number of Sequences: 37544
Number of extensions: 295757
Number of successful extensions: 736
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 8
length of query: 338
length of database: 14,793,348
effective HSP length: 82
effective length of query: 256
effective length of database: 11,714,740
effective search space: 2998973440
effective search space used: 2998973440
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)