Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000308-TA|BGIBMGA000308-PA|IPR001359|Synapsin
(338 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21320| Best HMM Match : Synapsin_C (HMM E-Value=9.6) 102 4e-22
SB_13155| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068) 31 1.3
SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17) 31 1.8
SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17) 31 1.8
SB_16415| Best HMM Match : RVT_1 (HMM E-Value=0.00052) 31 1.8
SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049) 31 1.8
SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051) 31 1.8
SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17) 31 1.8
SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18) 31 1.8
SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7) 29 4.1
SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021) 29 5.4
SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1
SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045) 29 7.1
SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_45039| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.4
SB_35092| Best HMM Match : CAT (HMM E-Value=0.00074) 28 9.4
>SB_21320| Best HMM Match : Synapsin_C (HMM E-Value=9.6)
Length = 127
Score = 102 bits (245), Expect = 4e-22
Identities = 47/81 (58%), Positives = 58/81 (71%), Gaps = 2/81 (2%)
Query: 259 PDFVLVRQNVRDAGA--DHRALLLGLKFGGVPSINSLNSIYHFQDRPWVFGHXXXXXXXX 316
PDFVLVRQ++R G D+R +LLGL+FG VPS+NSL SIY+F ++PWVF
Sbjct: 5 PDFVLVRQSIRGIGPREDYRHILLGLQFGNVPSVNSLESIYNFAEKPWVFSQLIQIKKRL 64
Query: 317 GRENFPLIEQTYYHNHTDMVS 337
G+E FPLIEQ YY NH +MVS
Sbjct: 65 GKEEFPLIEQAYYPNHKEMVS 85
>SB_13155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 31.1 bits (67), Expect = 1.3
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 128 SRGTSAPSSPAKSRESLLQRVQSLTGAARDQGANLLGSVTSVASVGRGYNR 178
S T P +PAKSR +R+ S G++ + + + +VT +S GR +R
Sbjct: 19 SPSTLLPKTPAKSRPDSQKRLNSSDGSSSKKYVSSVKAVTRASSSGRPSDR 69
>SB_21695| Best HMM Match : RVT_1 (HMM E-Value=0.00068)
Length = 1502
Score = 31.1 bits (67), Expect = 1.3
Identities = 29/95 (30%), Positives = 40/95 (42%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + + L G I + +F +F V E
Sbjct: 726 NKAKCIDDTLLWADDINSSFHQAVKWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 784
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 785 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 817
>SB_55168| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1017
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + L G I + +F +F V E
Sbjct: 159 NKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 217
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 218 SVRPCQKYLDTIRKFPTPVNVTDMRSW--FGLINQ 250
>SB_24087| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1229
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + L G I + +F +F V E
Sbjct: 406 NKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 464
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 465 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 497
>SB_16415| Best HMM Match : RVT_1 (HMM E-Value=0.00052)
Length = 316
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + L G I + +F +F V E
Sbjct: 225 NKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 283
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 284 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 316
>SB_12337| Best HMM Match : RVT_1 (HMM E-Value=0.00049)
Length = 447
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + L G I + +F +F V E
Sbjct: 211 NKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 269
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 270 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 302
>SB_9404| Best HMM Match : RVT_1 (HMM E-Value=0.00051)
Length = 471
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + L G I + +F +F V E
Sbjct: 284 NKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 342
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 343 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 375
>SB_23879| Best HMM Match : rve (HMM E-Value=2.2e-17)
Length = 1273
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + L G I + +F +F V E
Sbjct: 746 NKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 804
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 805 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 837
>SB_23421| Best HMM Match : rve (HMM E-Value=1.8e-18)
Length = 838
Score = 30.7 bits (66), Expect = 1.8
Identities = 29/95 (30%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL DD N+ + + L G I + +F +F V E
Sbjct: 31 NKTKCIDDTLLWADDINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 89
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 90 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 122
>SB_16514| Best HMM Match : Paxillin (HMM E-Value=3.7)
Length = 311
Score = 29.5 bits (63), Expect = 4.1
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 205 GEWDIRVEQAEFRLFLIVEVTLDSREYNLRIKRPYK-FEI-TKNPTPTKRVD-TRQWPDF 261
G+ +++++AEF+L ++ LR RPY E+ T +P V T QWP F
Sbjct: 3 GQDTVKIDEAEFKLQSLISPEFHQAREVLRQGRPYNGLEMNTLSPEQVAFVQGTAQWPKF 62
>SB_12273| Best HMM Match : fn3 (HMM E-Value=0.021)
Length = 317
Score = 29.1 bits (62), Expect = 5.4
Identities = 13/24 (54%), Positives = 15/24 (62%)
Query: 168 SVASVGRGYNRDRCVTLLVVDDQN 191
SVA GYN R VTL++ DQN
Sbjct: 93 SVALPSLGYNASRLVTLIITKDQN 116
>SB_41384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.7 bits (61), Expect = 7.1
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 52 VEALRRFSSGDLQSECDEGEVDPYTGRAATTSQPKPQAQKP 92
VE LRR G+ +E D+ E+ R A Q KP+A P
Sbjct: 220 VEDLRRKDQGNNNNEDDDFEIGDGDSRDAERKQEKPKAFAP 260
>SB_20221| Best HMM Match : RVT_1 (HMM E-Value=0.00045)
Length = 955
Score = 28.7 bits (61), Expect = 7.1
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 8/95 (8%)
Query: 177 NRDRCV--TLLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLR 234
N+ +C+ TLL D+ N+ + + L G I + +F +F V E
Sbjct: 443 NKTKCIDDTLLWADNINSSFHQAVNWLDLCGRHGITLNPDKF-VFAADTVEFAGFEITRN 501
Query: 235 IKRP---YKFEITKNPTPTKRVDTRQWPDFVLVRQ 266
RP Y I K PTP D R W F L+ Q
Sbjct: 502 SVRPCQKYLDAIRKFPTPVNVTDMRSW--FGLINQ 534
>SB_29377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 548
Score = 28.3 bits (60), Expect = 9.4
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 125 RGGSRGTSAPSSPAKSRE 142
RGGSRG SA SP K R+
Sbjct: 264 RGGSRGRSAEKSPEKQRD 281
>SB_45039| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 28.3 bits (60), Expect = 9.4
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 60 SGDLQSECDEGEVDPYTGRAAT-TSQPKPQAQKPTSQAT 97
S D C E + P T + +T T+QP PQ +P+ Q T
Sbjct: 197 SMDCHILCPETQPPPPTTQPSTNTTQPSPQTTQPSPQTT 235
>SB_35092| Best HMM Match : CAT (HMM E-Value=0.00074)
Length = 105
Score = 28.3 bits (60), Expect = 9.4
Identities = 17/76 (22%), Positives = 35/76 (46%)
Query: 201 RRLPGEWDIRVEQAEFRLFLIVEVTLDSREYNLRIKRPYKFEITKNPTPTKRVDTRQWPD 260
R L GEWD A ++V ++ + + ++RP + +IT K+ + +P
Sbjct: 24 RSLNGEWDAPCSGALSAAGVVVTRSVTATLASADVRRPVQLDITAFLKTVKKNKHKFYPA 83
Query: 261 FVLVRQNVRDAGADHR 276
F+ + + +A + R
Sbjct: 84 FIHILARLMNAHPEFR 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,480,765
Number of Sequences: 59808
Number of extensions: 335094
Number of successful extensions: 793
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 786
Number of HSP's gapped (non-prelim): 17
length of query: 338
length of database: 16,821,457
effective HSP length: 83
effective length of query: 255
effective length of database: 11,857,393
effective search space: 3023635215
effective search space used: 3023635215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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