GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000308-TA|BGIBMGA000308-PA|IPR001359|Synapsin
         (338 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein ...    25   3.0  
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   5.3  
AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubu...    24   7.0  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    23   9.2  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    23   9.2  

>CR954256-6|CAJ14147.1|  207|Anopheles gambiae predicted protein
           protein.
          Length = 207

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 187 VDDQNTDWSKYFRGRRLPGEWD 208
           V  ++ DW+     RRLP +WD
Sbjct: 170 VASEHPDWAFVAANRRLPFDWD 191


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 48  ARSSVEALRRFSSGDLQSECDEGE 71
           +R   E  RR S GD  SE +EGE
Sbjct: 954 SRKRKEKARRGSGGDSDSEEEEGE 977


>AJ438610-1|CAD27473.1|  838|Anopheles gambiae putative microtubule
           binding protein protein.
          Length = 838

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 12/49 (24%), Positives = 21/49 (42%)

Query: 250 TKRVDTRQWPDFVLVRQNVRDAGADHRALLLGLKFGGVPSINSLNSIYH 298
           TK++D +  P            G D + +   L++   P I SL++  H
Sbjct: 685 TKKIDIKAAPRIEAKNDAYIPKGGDKKIISTKLQWNAKPKIGSLDNASH 733


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 54  ALRRFSSGDLQSECDEGEVDPYTGRA 79
           ALRR  + D Q   +EGEV P   R+
Sbjct: 85  ALRRAQTQDEQRALNEGEVPPEPPRS 110


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 54  ALRRFSSGDLQSECDEGEVDPYTGRA 79
           ALRR  + D Q   +EGEV P   R+
Sbjct: 85  ALRRAQTQDEQRALNEGEVPPEPPRS 110


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 287,189
Number of Sequences: 2123
Number of extensions: 9775
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 6
length of query: 338
length of database: 516,269
effective HSP length: 64
effective length of query: 274
effective length of database: 380,397
effective search space: 104228778
effective search space used: 104228778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)