GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000308-TA|BGIBMGA000308-PA|IPR001359|Synapsin
         (338 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin prot...    47   2e-05
AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin prot...    36   0.031
AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin prot...    36   0.031

>AC006743-2|AAM97971.1|  474|Caenorhabditis elegans Synapsin protein
           1, isoform b protein.
          Length = 474

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 35/88 (39%), Positives = 45/88 (51%), Gaps = 18/88 (20%)

Query: 128 SRGTSAPSSPAKSRESLLQRVQSLTGAARDQGANLLGSVTSVASVGRGYNRDRCVTLLVV 187
           S   SAP+SPAKSRESL   ++      R +G  L+              +D  V LLV+
Sbjct: 39  SNTISAPTSPAKSRESLAAALERSLNHDRSRGEPLM--------------KDAKV-LLVI 83

Query: 188 DDQNTDWSKYFRGRRLPGEWDIRVEQAE 215
           D  + DWSKYFR      E+ IRVEQ +
Sbjct: 84  DSHHVDWSKYFRNHT---EYAIRVEQGD 108


>AF192746-1|AAF08804.1|  401|Caenorhabditis elegans synapsin
           protein.
          Length = 401

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 3/32 (9%)

Query: 184 LLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAE 215
           LLV+D  + DWSKYFR      E+ IRVEQ +
Sbjct: 7   LLVIDSHHVDWSKYFRNHT---EYAIRVEQGD 35


>AC006743-3|AAF60504.2|  401|Caenorhabditis elegans Synapsin protein
           1, isoform a protein.
          Length = 401

 Score = 36.3 bits (80), Expect = 0.031
 Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 3/32 (9%)

Query: 184 LLVVDDQNTDWSKYFRGRRLPGEWDIRVEQAE 215
           LLV+D  + DWSKYFR      E+ IRVEQ +
Sbjct: 7   LLVIDSHHVDWSKYFRNHT---EYAIRVEQGD 35


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,928,854
Number of Sequences: 27539
Number of extensions: 241673
Number of successful extensions: 495
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 3
length of query: 338
length of database: 12,573,161
effective HSP length: 82
effective length of query: 256
effective length of database: 10,314,963
effective search space: 2640630528
effective search space used: 2640630528
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)