GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000308-TA|BGIBMGA000308-PA|IPR001359|Synapsin
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g68380.1 68414.m07811 expressed protein contains Pfam profile...    30   2.5  
At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3, ubiqu...    29   3.4  
At4g27300.1 68417.m03917 S-locus protein kinase, putative simila...    29   5.9  
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    28   7.8  

>At1g68380.1 68414.m07811 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 392

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 192 TDWSKYFRGRRLPGEWDIRVEQAEF 216
           TDWSK     RL GEW++ VE  E+
Sbjct: 323 TDWSKRRAHPRLFGEWEVNVEFLEW 347


>At2g04660.1 68415.m00475 E3 ubiquitin ligase, putative E3,
           ubiquitin ligase; contains similarity to
           anaphase-promoting complex subunit 2 GI:6180009 from
           [Homo sapiens]
          Length = 865

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 128 SRGTSAPSSPAKSRESLLQRVQSLTGAARDQGANLL----GSVTSVASV 172
           S+G    S+ A S  S+L  V+S+T + +++G  LL       TS+ASV
Sbjct: 742 SKGVLRESTGANSNSSVLTLVESITDSGKNEGEELLTGEEEGETSIASV 790


>At4g27300.1 68417.m03917 S-locus protein kinase, putative similar
           to receptor protein kinase [Ipomoea trifida]
           gi|836954|gb|AAC23542; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 815

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 245 KNPTP---TKRVDTRQWPDFVLVRQNVRDAGADHRALLLGLKFGGVPSINSLNSIYHFQ 300
           K+P+P   T  +DTR  P  +L R+N   + +       GL F G P++   NS++ ++
Sbjct: 183 KDPSPGDFTLSLDTRGLPQLIL-RKNGDSSYSYRLGSWNGLSFTGAPAMGRENSLFDYK 240


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/67 (29%), Positives = 29/67 (43%)

Query: 139 KSRESLLQRVQSLTGAARDQGANLLGSVTSVASVGRGYNRDRCVTLLVVDDQNTDWSKYF 198
           KS+ S  Q  ++L   A D+  N      S AS G G N D  +     ++ +T   K+ 
Sbjct: 278 KSKNSGNQEAEALDLDADDESENAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFN 337

Query: 199 RGRRLPG 205
           R R   G
Sbjct: 338 RKRPAAG 344


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,664,422
Number of Sequences: 28952
Number of extensions: 232457
Number of successful extensions: 506
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 4
length of query: 338
length of database: 12,070,560
effective HSP length: 81
effective length of query: 257
effective length of database: 9,725,448
effective search space: 2499440136
effective search space used: 2499440136
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)