GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000307-TA|BGIBMGA000307-PA|IPR000834|Peptidase M14,
carboxypeptidase A, IPR008969|Carboxypeptidase regulatory region
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    32   0.20 
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    29   1.4  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    29   1.9  
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    28   3.3  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   7.7  

>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 31.9 bits (69), Expect = 0.20
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 3/83 (3%)

Query: 142 KDYLIGRTNNHEVDLNRNFPDLDAITFDFERQGLSHNNHLLKDLTQLSAPLEPETRAVMR 201
           K+  I   NNH +   +    L++ TF  E + L   N  LK L + +  ++P+ RA M 
Sbjct: 253 KNQSIINANNHLLSYEKEITSLNSPTF-IESKNLPSEN--LKSLLKETLAVDPKQRASMF 309

Query: 202 WIMSTPFVLSAAIHGGDLVANYP 224
            +  +P+   +AI     + ++P
Sbjct: 310 ELERSPYFTGSAIAALRFLESFP 332


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 1   MALYSFVCFSLLLTVSAEFQWKHHNNEELPLVLQEVHNNCPNITRIYAL 49
           + + + +C   LL V     W+ H+NEE     Q ++++ PN+    AL
Sbjct: 625 LVIAALICVPWLLIVKPFVLWRRHSNEENK--YQSLNSDLPNVDEADAL 671


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 212 AAIHGGDLVANYPYDESKTGASAAEYSASPDDETFKELAMTYALAHADMASPTRRGCHTT 271
           + I+ G +     YD S T AS       P      E  + YA+ + D++S   + C T+
Sbjct: 362 STIYSGTVATTITYDVSSTPASTVV--VIPTAVCNGERGLQYAVYNYDISSSKNQFCATS 419

Query: 272 SSDDVS 277
              DVS
Sbjct: 420 GVTDVS 425


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 432 EEFQGKTNWLQDLSSFGVYSPSLRNSQPRIYKRSLYEKVAETMLENKE 479
           E  Q   N+LQDL +F +++P     +P     SL + +A+ +L+N +
Sbjct: 803 EPLQTVLNFLQDLLAFALHTPPYSLIEP--LPDSLLKSLADLLLKNSQ 848


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)

Query: 377 PIRH--DVTTGPYGDYYRLLTPGQYEITATHTGHFQASRMVSVPKNQKSAIILDFRLEEF 434
           P+R+  +V    Y      +  G+YEI   H  HF  + +  +   Q+   +L  R   F
Sbjct: 395 PLRNYTEVQASFYNSVIADIESGEYEIAIEHCFHFSQTVLSGLRYLQRYDWLL-LRSIVF 453

Query: 435 QGKTNWLQDLSSFGVYSPSLRNSQPRIYKRSLYEKVA 471
            G  +W+  +  F V+S ++  S   +   S+ ++VA
Sbjct: 454 FGYLSWIGYVICF-VFSLNIEPSSKIVKPVSVVKRVA 489


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,429,790
Number of Sequences: 5004
Number of extensions: 110403
Number of successful extensions: 242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 5
length of query: 483
length of database: 2,362,478
effective HSP length: 75
effective length of query: 408
effective length of database: 1,987,178
effective search space: 810768624
effective search space used: 810768624
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)