GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000306-TA|BGIBMGA000306-PA|undefined
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    28   1.6  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    28   2.1  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    28   2.1  
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    27   3.6  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    27   4.8  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.3  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    26   6.3  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    26   8.4  

>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 190 MEWGANHEAWTFSLALSSEPVAKKLIKQFKIYS--FEELQRRSFLR 233
           ++ G +H  W FS+ +  +  A     Q  IYS     LQR S L+
Sbjct: 602 IDCGGSHRPWAFSMEMDIQSFASYRANQLYIYSTALNLLQRNSVLQ 647


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 97  WIAVVITFVYASIGLTIAQGCSSNKALLIVFGTIISQSQYIVSDSW 142
           WI +   FV  +I + +A G +     +I+FG     ++Y+V+ SW
Sbjct: 253 WIPLAKDFVGNNIAIDLAPGPAGQWGQVILFGR-DQDTKYVVARSW 297


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 3/102 (2%)

Query: 214 LIKQFKIYSFEELQRRSFLRKMAFSLE-ELPAGTFAIGEYLSKEAVQDMQLMLEFF--YF 270
           L++Q +     E Q R  + KMA   E E    + A  E    E+ Q + L+ +    Y 
Sbjct: 124 LLQQLEFKLSVEEQYRKGIEKMAKLYEREHDRRSIAEAEKKYVESAQKITLLKQALKRYH 183

Query: 271 DHCVAMLHKNSPYTEKLSELIGRLHQSGLLLAWESQVPTLSH 312
           D  + +  ++ P TE    L  R  QSGLL      +  ++H
Sbjct: 184 DLHIEIDEEDVPSTESRGNLNARRPQSGLLKITVGSLRNVTH 225


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 203 LALSSEPVAKKLIKQFKIYSFEELQRRS 230
           +A++SE + +KL + +K   FEELQR +
Sbjct: 1   MAVASEALLQKLTESWKNSRFEELQREA 28


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 48  IAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELP 88
           I  +Y W  +WKA D     + + +I +  +P  LE    P
Sbjct: 576 ITIVYKWCIDWKAKDLQPPSLLNMLILMFLSPGTLEDQLYP 616


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 7/22 (31%), Positives = 14/22 (63%)

Query: 47  GIAALYSWYEEWKAMDFSVSVV 68
           G+ A+  WY+ WK  ++ + V+
Sbjct: 187 GLKAVRGWYKNWKIEEYELEVI 208


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 40  VEGRSDFGIAALYSWYEEWKAMDFSVS 66
           +   S++ I +L +W  +WK  DF  S
Sbjct: 188 IRSDSNYSIKSLTTWLPKWKKNDFKTS 214


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 258 VQDMQLMLEFFYFDHCVAMLHKNSPYT-EKLSELIGRLHQSGLL 300
           VQD  +M E    DHC   L     Y  +KLS  +    +  LL
Sbjct: 281 VQDADIMAEVMGSDHCPVYLDLKEEYEGKKLSNFLSHSKEPPLL 324


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,828
Number of Sequences: 5004
Number of extensions: 60380
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 8
length of query: 325
length of database: 2,362,478
effective HSP length: 73
effective length of query: 252
effective length of database: 1,997,186
effective search space: 503290872
effective search space used: 503290872
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 54 (25.8 bits)