Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000306-TA|BGIBMGA000306-PA|undefined
(325 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0) 36 0.059
SB_35054| Best HMM Match : Lig_chan (HMM E-Value=1.2e-32) 35 0.079
SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0) 34 0.18
SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35) 32 0.73
SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6) 31 0.97
SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05) 31 1.7
SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.0
SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67) 29 5.2
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05) 29 6.8
SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4) 29 6.8
SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11) 28 9.0
>SB_48199| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 771
Score = 35.5 bits (78), Expect = 0.059
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 26/209 (12%)
Query: 1 MIDEFCRWINCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKA 60
++D +N +I +G + E G++G +V +D I + E +
Sbjct: 441 LLDLLAEKLNVKYEIRISKEKSYGSVKNGEWR-GILGELVRQEADIAIGPITITAEREQV 499
Query: 61 MDFSVSVVRSAVICLVPAPRVLESWELPFL-PFGKSIWIAVVITFVYASIGLTI------ 113
+DFS + + ++ P + FL PF K +W + +I + I
Sbjct: 500 IDFSKPFLDFRIAMILQKPLEEDVDLFAFLMPFQKDLWACCCLVVGAVTILMWILDRFSP 559
Query: 114 ------------AQG--CSSNKALLIVFGTIISQSQYIV--SDSWRIRSVIGWLLVSSLI 157
+G S +L G+I+ Q S S R+ + WL +LI
Sbjct: 560 YGFRAEAKNTGEGEGDEFSLPNSLWFATGSILQQGGDNTPRSGSGRVLAASFWLF--TLI 617
Query: 158 LVSAYGAGLASTFTVPQYEPSIDTVQDLL 186
L+S Y A LA+ FT + +I++++DL+
Sbjct: 618 LISTYTANLAAFFTAQNSKSTINSLEDLV 646
>SB_35054| Best HMM Match : Lig_chan (HMM E-Value=1.2e-32)
Length = 496
Score = 35.1 bits (77), Expect = 0.079
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
G+IG ++ G +D IA L + +DF+ + + LV + W + FL PF
Sbjct: 44 GLIGELLRGEADVAIADLTITDARSRVVDFTHPFLHVGMAILVAVYKNRSGWLVRFLEPF 103
Query: 93 GKSIWIAVV 101
+WI V
Sbjct: 104 STELWIVAV 112
>SB_15542| Best HMM Match : Lig_chan (HMM E-Value=0)
Length = 729
Score = 33.9 bits (74), Expect = 0.18
Identities = 41/214 (19%), Positives = 89/214 (41%), Gaps = 27/214 (12%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
G++G +++ ++D +A + E +DFS + ++ + E F+ PF
Sbjct: 226 GMVGDLIDKKADMALAPITITAERESKIDFSKPFMDFMQSLIMKEMKEEEISLFAFVQPF 285
Query: 93 GKSIWIAVVITFVYASIGLTIA----------------QGCSSN----KALLIVFGTIIS 132
++W+ +++ ++ +I + + +G +L +++
Sbjct: 286 DGTVWLLIIVVVLFVTIMMFVVDLWSPFGHRAEARITDEGAGDEFNLFNSLWFATASMLQ 345
Query: 133 QSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLL-NSR 189
Q S S RI + W + LI++S Y A LA+ FT + I+T+ DL +
Sbjct: 346 QGPDNTPKSPSGRILASAFWFFI--LIIISTYTANLAAFFTKKTSKNFIETLDDLTKQKK 403
Query: 190 MEWGA-NHEAWTFSLALSSEPVAKKLIKQFKIYS 222
+ +G + S+ P+ K + +Q + S
Sbjct: 404 ISYGCLKGGSMASFFEKSNNPLYKTMFRQMEFVS 437
>SB_14385| Best HMM Match : ANF_receptor (HMM E-Value=6.5e-35)
Length = 1003
Score = 31.9 bits (69), Expect = 0.73
Identities = 14/67 (20%), Positives = 30/67 (44%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFLPFG 93
GVI +++ R+D + + WK +DF+ + S + ++ + + PF
Sbjct: 424 GVINELIQERADLAVGPITITSHRWKVIDFTQPFMTSGIGVVMGTENSPKPYFRFLEPFK 483
Query: 94 KSIWIAV 100
+WI +
Sbjct: 484 SDLWITI 490
>SB_28347| Best HMM Match : SBP_bac_3 (HMM E-Value=2.6)
Length = 212
Score = 31.5 bits (68), Expect = 0.97
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLV-PAPRVLESWELPFLPF 92
GV+ V+ GR+D + +L E K +DF+ + + L+ P P ++ PF
Sbjct: 137 GVVREVLNGRADLAVTSLTISPERQKVIDFTQPYMDLGLTVLIKPDPTEEKNPFAILRPF 196
Query: 93 GKSIWIAVVITFV 105
+W+A+ T +
Sbjct: 197 RYDLWMAIGGTMI 209
>SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 31.5 bits (68), Expect = 0.97
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVR---SAVICLVPAPRVLESWELPFL 90
G+IG +V+GR++ + + +DF+ + +I V + W
Sbjct: 500 GMIGDLVDGRAELALTSFEMSSARQDVIDFADAAFMYHDRVIIMPVKSSYTSHDWFGFMK 559
Query: 91 PFGKSIWIAVVITFV 105
PFG +W+A V T V
Sbjct: 560 PFGTHLWVAFVSTSV 574
>SB_9731| Best HMM Match : Lig_chan (HMM E-Value=3.7e-05)
Length = 435
Score = 30.7 bits (66), Expect = 1.7
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 150 WLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLLNSR-MEWGANHEAWTFSLALSSE 208
W +S I + Y A LA+ TV +YE I +++DL + + + +G L +S
Sbjct: 2 WFAIS--IFGATYTANLAAFLTVNKYEHPIKSIEDLADQQGIAYGTAPGQLAEMLKTASL 59
Query: 209 PVAKKL 214
PV +KL
Sbjct: 60 PVYEKL 65
>SB_35466| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 829
Score = 29.9 bits (64), Expect = 3.0
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPA 78
G++G +VEGR+D + + +A+DF+ ++ S ++ L+ A
Sbjct: 462 GMVGDLVEGRADVALMGMTVSKVRSEAIDFTPAITPSKLVILMHA 506
>SB_43455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 924
Score = 29.9 bits (64), Expect = 3.0
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 126 VFGTIISQSQYIVSDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDL 185
+ G + ++ + SD ++IGWLL S V++ + LA + Y+P D + ++
Sbjct: 71 IVGVVHPSNEVLCSDIIPRWAIIGWLLTSCQTAVASANSKLALFYDWLFYQPDKDNIMNI 130
>SB_33931| Best HMM Match : NADH5_C (HMM E-Value=0.67)
Length = 407
Score = 29.1 bits (62), Expect = 5.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 47 GIAALYSWYEEWKAMD-FSVSVVRSAVIC 74
G+AA+ SW W A+D F+ + V SA IC
Sbjct: 138 GLAAVLSWRGVWLALDVFTSTSVLSAAIC 166
>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
Length = 1084
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFS-VSVV--RSAVICLVPAPRVLESWELPFL 90
G+IG +++G+++ + +L + +DFS V + ++ V + W
Sbjct: 446 GMIGDLIDGKAELALTSLELSLAREEVVDFSNVPFIYHDRVIVMAVKSSYTSHDWFGFTK 505
Query: 91 PFGKSIWIAVVITFVYASIGLTI 113
PF S+W ITF AS+ L I
Sbjct: 506 PFSTSLW----ITFGAASVILVI 524
>SB_3422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1270
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 27 YENETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLV 76
++N G+IG VV G +D ++++ + K +DFS + + LV
Sbjct: 155 FKNGKWTGLIGEVVAGNADMAMSSISITSQRSKFVDFSEPFIHTGSTILV 204
>SB_1815| Best HMM Match : Lig_chan (HMM E-Value=1.4)
Length = 698
Score = 28.7 bits (61), Expect = 6.8
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFS-VSVV--RSAVICLVPAPRVLESWELPFL 90
G+IG +++G+++ + +L + +DFS V + ++ V + W
Sbjct: 118 GMIGDLIDGKAELALTSLELSLAREEVVDFSNVPFIYHDRVIVMAVKSSYTSHDWFGFTK 177
Query: 91 PFGKSIWIAVVITFVYASIGLTI 113
PF S+W ITF AS+ L I
Sbjct: 178 PFSTSLW----ITFGAASVILVI 196
>SB_41275| Best HMM Match : Lig_chan (HMM E-Value=2.3e-11)
Length = 1171
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 145 RSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLLN 187
R V G L L+ VS Y A LA+ T + +I+ ++D+L+
Sbjct: 185 RIVTGTLWFVILVWVSTYTANLAAFLTTSSSDSAINNLEDVLD 227
Score = 28.3 bits (60), Expect = 9.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 141 SWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLLN 187
S R+ + W + LI +S Y A LA+ FTV ++ T++D+++
Sbjct: 1049 SGRVLAGCFWFCI--LIWISTYTANLAAFFTVRSAGKTVSTLEDVVD 1093
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,186
Number of Sequences: 59808
Number of extensions: 383481
Number of successful extensions: 785
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 21
length of query: 325
length of database: 16,821,457
effective HSP length: 82
effective length of query: 243
effective length of database: 11,917,201
effective search space: 2895879843
effective search space used: 2895879843
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)
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