GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000306-TA|BGIBMGA000306-PA|undefined
         (325 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    27   0.71 
AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.           24   6.7  

>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 27.1 bits (57), Expect = 0.71
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 272 HCVAMLHKNSPYTEKLSELIGRLHQSGLLLAWESQVPTLSHQCKY 316
           H   +  +    TE+L E++ +  + G L   ESQ+  L ++ KY
Sbjct: 683 HMAQLKLQKEKITEELKEVMKKTRRQGELTTVESQIRGLENRLKY 727


>AY823259-1|AAX18444.1|  194|Anopheles gambiae pburs protein.
          Length = 194

 Score = 23.8 bits (49), Expect = 6.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 3   DEFCRWINCTVQIIREDVDLWGEIYENETG 32
           DE C  +   + +I+E+ D  G +Y    G
Sbjct: 82  DETCETLPSEIHLIKEEYDELGRLYRTCNG 111


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 328,622
Number of Sequences: 2123
Number of extensions: 12635
Number of successful extensions: 15
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 2
length of query: 325
length of database: 516,269
effective HSP length: 64
effective length of query: 261
effective length of database: 380,397
effective search space: 99283617
effective search space used: 99283617
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 48 (23.4 bits)