Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000306-TA|BGIBMGA000306-PA|undefined
(325 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate rece... 50 3e-06
U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate rece... 50 3e-06
AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA iono... 50 3e-06
U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic glut... 49 4e-06
L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate recep... 49 4e-06
Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical pr... 47 2e-05
AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic gl... 47 2e-05
AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic gl... 40 0.003
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 40 0.003
U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate recep... 37 0.017
AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic gl... 37 0.017
U51999-8|AAA96090.2| 465|Caenorhabditis elegans Glutamate recep... 35 0.068
AF318611-1|AAK01099.1| 436|Caenorhabditis elegans ionotropic gl... 35 0.068
U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate rece... 34 0.12
AF318608-1|AAK01096.1| 409|Caenorhabditis elegans ionotropic gl... 34 0.12
Z82286-8|CAB05308.2| 487|Caenorhabditis elegans Hypothetical pr... 30 2.6
Z81142-6|CAB03506.1| 338|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical p... 29 3.4
AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic gl... 29 3.4
Z74475-5|CAA98959.2| 279|Caenorhabditis elegans Hypothetical pr... 29 5.9
>U10438-16|AAO61447.1| 977|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform b protein.
Length = 977
Score = 49.6 bits (113), Expect = 3e-06
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
G+IG ++ +D +A L E +A+DFS + + + ++ P E F+ P
Sbjct: 559 GMIGYLLNETADVAVAPLTITQERERAVDFSKPFMTTGISIMIKKPEKQEFNIFSFMEPL 618
Query: 93 GKSIWIAVVITFVYASIGL--------------------TIAQGCSSNKALLIVFGTIIS 132
G +IWI + ++ S+ + T+ + +L +
Sbjct: 619 GMTIWIFTLSSYFGVSLTIFLVSWFSPYEKRIEFKRGEFTVTNEFTLYNSLWFTLAAFMQ 678
Query: 133 QSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLLN-SR 189
Q I+ + S RI S W +LI+VS+Y A LA+ T+ + P I++V+DL N ++
Sbjct: 679 QGTDILPRAVSGRIASSCWWFF--TLIIVSSYTANLAAFLTLERMTPPIESVEDLANQNK 736
Query: 190 MEWGANHEAWTFSLALSS-EPVAKKL 214
+ +G N T + S P+ KK+
Sbjct: 737 ILYGVNEGGSTAAFFEDSIVPLYKKM 762
>U10438-15|AAA19090.3| 908|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 2, isoform a protein.
Length = 908
Score = 49.6 bits (113), Expect = 3e-06
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
G+IG ++ +D +A L E +A+DFS + + + ++ P E F+ P
Sbjct: 490 GMIGYLLNETADVAVAPLTITQERERAVDFSKPFMTTGISIMIKKPEKQEFNIFSFMEPL 549
Query: 93 GKSIWIAVVITFVYASIGL--------------------TIAQGCSSNKALLIVFGTIIS 132
G +IWI + ++ S+ + T+ + +L +
Sbjct: 550 GMTIWIFTLSSYFGVSLTIFLVSWFSPYEKRIEFKRGEFTVTNEFTLYNSLWFTLAAFMQ 609
Query: 133 QSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLLN-SR 189
Q I+ + S RI S W +LI+VS+Y A LA+ T+ + P I++V+DL N ++
Sbjct: 610 QGTDILPRAVSGRIASSCWWFF--TLIIVSSYTANLAAFLTLERMTPPIESVEDLANQNK 667
Query: 190 MEWGANHEAWTFSLALSS-EPVAKKL 214
+ +G N T + S P+ KK+
Sbjct: 668 ILYGVNEGGSTAAFFEDSIVPLYKKM 693
>AF318606-1|AAK01094.2| 977|Caenorhabditis elegans non-NMDA
ionotropic glutamate receptorsubunit GLR-2 protein.
Length = 977
Score = 49.6 bits (113), Expect = 3e-06
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 27/206 (13%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
G+IG ++ +D +A L E +A+DFS + + + ++ P E F+ P
Sbjct: 559 GMIGYLLNETADVAVAPLTITQERERAVDFSKPFMTTGISIMIKKPEKQEFNIFSFMEPL 618
Query: 93 GKSIWIAVVITFVYASIGL--------------------TIAQGCSSNKALLIVFGTIIS 132
G +IWI + ++ S+ + T+ + +L +
Sbjct: 619 GMTIWIFTLSSYFGVSLTIFLVSWFSPYEKRIEFKRGEFTVTNEFTLYNSLWFTLAAFMQ 678
Query: 133 QSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLLN-SR 189
Q I+ + S RI S W +LI+VS+Y A LA+ T+ + P I++V+DL N ++
Sbjct: 679 QGTDILPRAVSGRIASSCWWFF--TLIIVSSYTANLAAFLTLERMTPPIESVEDLANQNK 736
Query: 190 MEWGANHEAWTFSLALSS-EPVAKKL 214
+ +G N T + S P+ KK+
Sbjct: 737 ILYGVNEGGSTAAFFEDSIVPLYKKM 762
>U34661-1|AAA92006.1| 962|Caenorhabditis elegans ionotropic
glutamate receptor subunitprotein.
Length = 962
Score = 49.2 bits (112), Expect = 4e-06
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
G+IG ++ GR+ +A+L E + +DFS + + + ++ P E F+ P
Sbjct: 531 GMIGELLSGRAHAVVASLTINQERERVVDFSKPFMTTGISIMIKKPDKQEFSVFSFMQPL 590
Query: 93 GKSIWIAVVITFVYASI---------------------GLTIAQGCSSNKALLIVFGTII 131
IW+ ++ ++ S+ G TI+ S L +
Sbjct: 591 STEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSRGGFTISNDFSVYNCLWFTLAAFM 650
Query: 132 SQSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLL-NS 188
Q I+ S S RI S W ++I+VS+Y A LA+ T+ + + I++V+DL S
Sbjct: 651 QQGTDILPRSISGRIASSAWWFF--TMIIVSSYTANLAAFLTLEKMQAPIESVEDLAKQS 708
Query: 189 RMEWG 193
++++G
Sbjct: 709 KIKYG 713
>L16559-2|AAA27933.3| 962|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 1 protein.
Length = 962
Score = 49.2 bits (112), Expect = 4e-06
Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 27/185 (14%)
Query: 34 GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
G+IG ++ GR+ +A+L E + +DFS + + + ++ P E F+ P
Sbjct: 531 GMIGELLSGRAHAVVASLTINQERERVVDFSKPFMTTGISIMIKKPDKQEFSVFSFMQPL 590
Query: 93 GKSIWIAVVITFVYASI---------------------GLTIAQGCSSNKALLIVFGTII 131
IW+ ++ ++ S+ G TI+ S L +
Sbjct: 591 STEIWMYIIFAYIGVSVVIFLVSRFSPYEWRVEETSRGGFTISNDFSVYNCLWFTLAAFM 650
Query: 132 SQSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDLL-NS 188
Q I+ S S RI S W ++I+VS+Y A LA+ T+ + + I++V+DL S
Sbjct: 651 QQGTDILPRSISGRIASSAWWFF--TMIIVSSYTANLAAFLTLEKMQAPIESVEDLAKQS 708
Query: 189 RMEWG 193
++++G
Sbjct: 709 KIKYG 713
>Z75545-5|CAA99883.3| 836|Caenorhabditis elegans Hypothetical
protein K10D3.1 protein.
Length = 836
Score = 46.8 bits (106), Expect = 2e-05
Identities = 65/312 (20%), Positives = 121/312 (38%), Gaps = 32/312 (10%)
Query: 12 TVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSA 71
T+Q +R++ +G N G++G + G +D +A+L Y + +DF+V +
Sbjct: 442 TIQKVRDNA--YGSKESNGKWSGMVGELQRGDADLAVASLTISYGRSEVIDFTVPYMHLG 499
Query: 72 VICLVPAPRVLESWELPFL-PFGKSIWIAVVITFVYASIGLTIAQGCSS----------- 119
+ L PR+ +S F+ P +WI ++ S+ + I S
Sbjct: 500 ISILFKKPRIRDSDWFKFMDPLSTQVWIMTFASYFVVSVAIWIIAKISPYEQFERDEDNG 559
Query: 120 -----------NKALLIVFGTIISQSQYIVSDSWRIRSVIGWLLVSSLILVSAYGAGLAS 168
+ +++ Q + + R + G +LIL+S+Y A LA+
Sbjct: 560 QYKPVDNQFSLRNSFWFTVCSLMQQGSELCPRAASTRLLTGIWWFFALILISSYTANLAA 619
Query: 169 TFTVPQYEPSIDTVQDL-LNSRMEWGANHEAWTFSLALSSEPVAKKLIKQFKIYS---FE 224
T + E I+ DL +++++G T S S+ + + Q S F
Sbjct: 620 VLTTRRMETPIENADDLAAQTKIKYGTLGRGSTMSFFNESKIETYERMWQLMSSSPGLFV 679
Query: 225 ELQRRSFLRKMAFSLEELPAGTFAIGEYLSKEAVQDMQLMLEFFYFDHCVAMLHKNSPYT 284
+ + R + L + EY + + MQ+ + + L K SPY
Sbjct: 680 QSSKEGIARVKSSDYAYLMESSML--EYAVERDCELMQIGGLIDQKGYGIG-LPKGSPYR 736
Query: 285 EKLSELIGRLHQ 296
E +S I RL +
Sbjct: 737 ELISTAILRLQE 748
>AF318607-1|AAK01095.1| 398|Caenorhabditis elegans ionotropic
glutamate receptor GLR-3 protein.
Length = 398
Score = 46.8 bits (106), Expect = 2e-05
Identities = 65/312 (20%), Positives = 121/312 (38%), Gaps = 32/312 (10%)
Query: 12 TVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSA 71
T+Q +R++ +G N G++G + G +D +A+L Y + +DF+V +
Sbjct: 38 TIQKVRDNA--YGSKESNGKWSGMVGELQRGDADLAVASLTISYGRSEVIDFTVPYMHLG 95
Query: 72 VICLVPAPRVLESWELPFL-PFGKSIWIAVVITFVYASIGLTIAQGCSS----------- 119
+ L PR+ +S F+ P +WI ++ S+ + I S
Sbjct: 96 ISILFKKPRIRDSDWFKFMDPLSTQVWIMTFASYFVVSVAIWIIAKISPYEQFERDEDNG 155
Query: 120 -----------NKALLIVFGTIISQSQYIVSDSWRIRSVIGWLLVSSLILVSAYGAGLAS 168
+ +++ Q + + R + G +LIL+S+Y A LA+
Sbjct: 156 QYKPVDNQFSLRNSFWFTVCSLMQQGSELCPRAASTRLLTGIWWFFALILISSYTANLAA 215
Query: 169 TFTVPQYEPSIDTVQDL-LNSRMEWGANHEAWTFSLALSSEPVAKKLIKQFKIYS---FE 224
T + E I+ DL +++++G T S S+ + + Q S F
Sbjct: 216 VLTTRRMETPIENADDLAAQTKIKYGTLGRGSTMSFFNESKIETYERMWQLMSSSPGLFV 275
Query: 225 ELQRRSFLRKMAFSLEELPAGTFAIGEYLSKEAVQDMQLMLEFFYFDHCVAMLHKNSPYT 284
+ + R + L + EY + + MQ+ + + L K SPY
Sbjct: 276 QSSKEGIARVKSSDYAYLMESSML--EYAVERDCELMQIGGLIDQKGYGIG-LPKGSPYR 332
Query: 285 EKLSELIGRLHQ 296
E +S I RL +
Sbjct: 333 ELISTAILRLQE 344
>AF318610-1|AAK01098.1| 396|Caenorhabditis elegans ionotropic
glutamate receptor GLR-6 protein.
Length = 396
Score = 39.5 bits (88), Expect = 0.003
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 10 NCTVQIIREDVDLWGEIYEN-ETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVV 68
N T++I++++ +GE + G+IG ++ G +D +A + + +DF+ +
Sbjct: 40 NYTLKIVKDNK--YGERKNGTDEWDGMIGEILRGDADMAVAPITVTATRLEVIDFTDPFL 97
Query: 69 RSAVICLVPAPRVLESWELP-FL-PFGKSIW----IAVVITFVYASIGLTIAQGCSS--- 119
+ + L+ P S L FL P S+W IA VIT + ++ ++ S+
Sbjct: 98 QLGISMLMRQPNPKSSSSLTRFLWPLSASVWTFSAIATVITALLVTVAAVLSPKESTAEF 157
Query: 120 ---NKALLIVFGTIISQSQY-IVSDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQY 175
N +V + + S Y + + R+ S + W +L+L++ Y A A+ TV +
Sbjct: 158 KIQNSVWYLVCILLRAGSGYNCQAGATRLISAVWWSF--TLVLIAQYTANFAALLTVDRK 215
Query: 176 EPSIDTVQDLLN 187
++ ++L N
Sbjct: 216 SMPFNSFEELGN 227
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 39.5 bits (88), Expect = 0.003
Identities = 44/192 (22%), Positives = 89/192 (46%), Gaps = 18/192 (9%)
Query: 10 NCTVQIIREDVDLWGEIYEN-ETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVV 68
N T++I++++ +GE + G+IG ++ G +D +A + + +DF+ +
Sbjct: 452 NYTLKIVKDNK--YGERKNGTDEWDGMIGEILRGDADMAVAPITVTATRLEVIDFTDPFL 509
Query: 69 RSAVICLVPAPRVLESWELP-FL-PFGKSIW----IAVVITFVYASIGLTIAQGCSS--- 119
+ + L+ P S L FL P S+W IA VIT + ++ ++ S+
Sbjct: 510 QLGISMLMRQPNPKSSSSLTRFLWPLSASVWTFSAIATVITALLVTVAAVLSPKESTAEF 569
Query: 120 ---NKALLIVFGTIISQSQY-IVSDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQY 175
N +V + + S Y + + R+ S + W +L+L++ Y A A+ TV +
Sbjct: 570 KIQNSVWYLVCILLRAGSGYNCQAGATRLISAVWWSF--TLVLIAQYTANFAALLTVDRK 627
Query: 176 EPSIDTVQDLLN 187
++ ++L N
Sbjct: 628 SMPFNSFEELGN 639
>U97007-1|AAB52291.1| 932|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 5 protein.
Length = 932
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 27 YENETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWE 86
Y N + G++G ++ G ++ +A L Y +A+DF+ + + L P +
Sbjct: 499 YGNGSWDGMMGEILRGEAEMAVAPLTVNYRRSEAVDFTKPFLSLGISILYKVPDDQQPDL 558
Query: 87 LPFL-PFGKSIWIAVVITFVYASIGL 111
FL P IW A+ + + ++G+
Sbjct: 559 FSFLNPLSWQIWTAIATSIITVTLGM 584
>AF318609-1|AAK01097.1| 425|Caenorhabditis elegans ionotropic
glutamate receptor GLR-5 protein.
Length = 425
Score = 37.1 bits (82), Expect = 0.017
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 27 YENETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWE 86
Y N + G++G ++ G ++ +A L Y +A+DF+ + + L P +
Sbjct: 59 YGNGSWDGMMGEILRGEAEMAVAPLTVNYRRSEAVDFTKPFLSLGISILYKVPDDQQPDL 118
Query: 87 LPFL-PFGKSIWIAVVITFVYASIGL 111
FL P IW A+ + + ++G+
Sbjct: 119 FSFLNPLSWQIWTAIATSIITVTLGM 144
>U51999-8|AAA96090.2| 465|Caenorhabditis elegans Glutamate receptor
family (ampa)protein 7 protein.
Length = 465
Score = 35.1 bits (77), Expect = 0.068
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 9 INCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVV 68
+N T I + +G + +N G+IG++V G +D +A L E +DF+V
Sbjct: 51 VNFTYTIYEVEDGSFGTMDDNGNWNGLIGALVSGSADIALAPLSVMAERENDVDFTVPYY 110
Query: 69 RSAVICLVPAPRVLESWELPFLPFGK-SIWIAVVITFVYASIGLTI 113
++ +E F+ + +W+ +V +++ SI L I
Sbjct: 111 DLVGTTILMKKADVEYSLFKFMKVLEWPVWLCIVAAYLFTSILLWI 156
>AF318611-1|AAK01099.1| 436|Caenorhabditis elegans ionotropic
glutamate receptor GLR-7 protein.
Length = 436
Score = 35.1 bits (77), Expect = 0.068
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 1/106 (0%)
Query: 9 INCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVV 68
+N T I + +G + +N G+IG++V G +D +A L E +DF+V
Sbjct: 35 VNFTYTIYEVEDGSFGTMDDNGNWNGLIGALVSGSADIALAPLSVMAERENDVDFTVPYY 94
Query: 69 RSAVICLVPAPRVLESWELPFLPFGK-SIWIAVVITFVYASIGLTI 113
++ +E F+ + +W+ +V +++ SI L I
Sbjct: 95 DLVGTTILMKKADVEYSLFKFMKVLEWPVWLCIVAAYLFTSILLWI 140
>U39849-10|AAA81054.3| 951|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 4 protein.
Length = 951
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 128 GTIISQSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDL 185
G+++ Q ++ + + R+ +V+ W+ I++S+Y A LA+ TV + I++ QDL
Sbjct: 592 GSLMQQGSDVIPRAAATRLIAVVWWMFTQ--IIISSYTAQLAAFLTVERMSTPIESTQDL 649
Query: 186 LNSR 189
N +
Sbjct: 650 ANQQ 653
Score = 32.3 bits (70), Expect = 0.48
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 1 MIDEFCRWINCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKA 60
+++E + + II +G E+ G+IG++ +D ++A+ Y +
Sbjct: 436 LLNEMTQVLKFNYTIIEVQDGTYGIEDESGRWNGIIGALQRHEADLSLSAVTITYSRAEV 495
Query: 61 MDFSVSVVRSAV-ICLVPAPRVLESWEL-PFL-PFGKSIWIAVVITFVYASIGLTI 113
+DF++ + + I L + L FL P ++WI+++I++ S + I
Sbjct: 496 VDFTLPFMHLGISILLARTSEETDKGSLWTFLEPLSLTVWISLLISYCIVSYSMHI 551
>AF318608-1|AAK01096.1| 409|Caenorhabditis elegans ionotropic
glutamate receptor GLR-4 protein.
Length = 409
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 128 GTIISQSQYIV--SDSWRIRSVIGWLLVSSLILVSAYGAGLASTFTVPQYEPSIDTVQDL 185
G+++ Q ++ + + R+ +V+ W+ I++S+Y A LA+ TV + I++ QDL
Sbjct: 181 GSLMQQGSDVIPRAAATRLIAVVWWMFTQ--IIISSYTAQLAAFLTVERMSTPIESTQDL 238
Query: 186 LNSR 189
N +
Sbjct: 239 ANQQ 242
Score = 32.3 bits (70), Expect = 0.48
Identities = 24/116 (20%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 1 MIDEFCRWINCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKA 60
+++E + + II +G E+ G+IG++ +D ++A+ Y +
Sbjct: 25 LLNEMTQVLKFNYTIIEVQDGTYGIEDESGRWNGIIGALQRHEADLSLSAVTITYSRAEV 84
Query: 61 MDFSVSVVRSAV-ICLVPAPRVLESWEL-PFL-PFGKSIWIAVVITFVYASIGLTI 113
+DF++ + + I L + L FL P ++WI+++I++ S + I
Sbjct: 85 VDFTLPFMHLGISILLARTSEETDKGSLWTFLEPLSLTVWISLLISYCIVSYSMHI 140
>Z82286-8|CAB05308.2| 487|Caenorhabditis elegans Hypothetical
protein W02A2.5 protein.
Length = 487
Score = 29.9 bits (64), Expect = 2.6
Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 23 WGEIYENETGIGVIGSVVEGRSDFGIAALYSWYE---EWKAMDFSVSVVRSAVICLVPAP 79
WG + +N T GV+G + G +D +A +Y + E+ + V+ V+ +
Sbjct: 69 WGTLQKNGTWSGVLGYLQNGTAD-AVALMYQKTDTRNEYFEYSYPVTNVQPVFVARKKTE 127
Query: 80 RVLESWELPFLPFGKSIWIAVVITFV 105
+ F PF +W+ ++ + V
Sbjct: 128 TLGSVLWNAFKPFSVEVWLCLLASLV 153
>Z81142-6|CAB03506.1| 338|Caenorhabditis elegans Hypothetical
protein ZK1037.7 protein.
Length = 338
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 10/76 (13%)
Query: 84 SWELPFLPFGKSIWI-------AVVITFVYASIGLTIAQGCSSNKALLIVFGTIISQSQY 136
S+ + +PFG S+WI AV+ +F+Y S +T ++ I+F + SQ +
Sbjct: 259 SFSISQIPFGISVWIDAMFQFNAVLDSFIYNSKSITSILFTINSTLHCIIFAALSSQYRE 318
Query: 137 IVSDSWRIRSVIGWLL 152
+ +W + IG L+
Sbjct: 319 V---AWDMTGCIGRLI 331
>Z81061-7|CAB02939.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 1 MIDEFCRWINCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKA 60
++++ I T + + + WG EN G+I ++ ++D + +L E +
Sbjct: 353 LLNKLANDIGFTYTLYKVRDEKWGLKTENGWN-GLIADLMHNKADMCVTSLKLNSERARD 411
Query: 61 MDFSVSVVRSAVICLVPAPRVLESWELPFLPFGKSIWIAVVITFVYAS 108
+DFS+ + + + +V + S PF S W+ ++ ++ +
Sbjct: 412 IDFSLPFLDTGISIIVKIRSGVLSPTAFLEPFEYSTWVIILFVCIHVA 459
>Z78413-11|CAB01667.2| 819|Caenorhabditis elegans Hypothetical
protein T01C3.10 protein.
Length = 819
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 1 MIDEFCRWINCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKA 60
++++ I T + + + WG EN G+I ++ ++D + +L E +
Sbjct: 353 LLNKLANDIGFTYTLYKVRDEKWGLKTENGWN-GLIADLMHNKADMCVTSLKLNSERARD 411
Query: 61 MDFSVSVVRSAVICLVPAPRVLESWELPFLPFGKSIWIAVVITFVYAS 108
+DFS+ + + + +V + S PF S W+ ++ ++ +
Sbjct: 412 IDFSLPFLDTGISIIVKIRSGVLSPTAFLEPFEYSTWVIILFVCIHVA 459
>AF318614-1|AAK01102.1| 433|Caenorhabditis elegans ionotropic
glutamate receptor NMR-2 protein.
Length = 433
Score = 29.5 bits (63), Expect = 3.4
Identities = 20/108 (18%), Positives = 48/108 (44%), Gaps = 1/108 (0%)
Query: 1 MIDEFCRWINCTVQIIREDVDLWGEIYENETGIGVIGSVVEGRSDFGIAALYSWYEEWKA 60
++++ I T + + + WG EN G+I ++ ++D + +L E +
Sbjct: 60 LLNKLANDIGFTYTLYKVRDEKWGLKTENGWN-GLIADLMHNKADMCVTSLKLNSERARD 118
Query: 61 MDFSVSVVRSAVICLVPAPRVLESWELPFLPFGKSIWIAVVITFVYAS 108
+DFS+ + + + +V + S PF S W+ ++ ++ +
Sbjct: 119 IDFSLPFLDTGISIIVKIRSGVLSPTAFLEPFEYSTWVIILFVCIHVA 166
>Z74475-5|CAA98959.2| 279|Caenorhabditis elegans Hypothetical
protein R04F11.1 protein.
Length = 279
Score = 28.7 bits (61), Expect = 5.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 89 FLPFGKSIWIAVVITFVYASIGLTI--AQGCSSNKALLIVFGTIISQSQYIVSD 140
FLP K + V TFV+ I + I C ALL V G ++ + +++D
Sbjct: 106 FLPHHKGVIFFAVFTFVFGLISILIGSCSPCFPPNALLYVVGVFMTGACSLLAD 159
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.136 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,750,933
Number of Sequences: 27539
Number of extensions: 305487
Number of successful extensions: 685
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 32
length of query: 325
length of database: 12,573,161
effective HSP length: 82
effective length of query: 243
effective length of database: 10,314,963
effective search space: 2506536009
effective search space used: 2506536009
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 60 (28.3 bits)
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