GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000306-TA|BGIBMGA000306-PA|undefined
         (325 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    30   0.031
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    29   0.055
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    26   0.39 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      26   0.51 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.51 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    26   0.51 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.3  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 29.9 bits (64), Expect = 0.031
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 34  GVIGSVVEGRSDFGIAALYSWYEEWKAMDFSVSVVRSAVICLVPAPRVLESWELPFL-PF 92
           G+IG +V  R+D  +A L    E  + ++FS       +  L   P    S  + FL PF
Sbjct: 506 GLIGELVNERADMIVAPLTINPERAEFIEFSKPFKYQGITILEKKPS-RSSTLVSFLQPF 564

Query: 93  GKSIWIAVVIT 103
             ++WI V+++
Sbjct: 565 SNTLWILVMVS 575


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 29.1 bits (62), Expect = 0.055
 Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 6/68 (8%)

Query: 48  IAALYSWYEEWKAMDF---SVSVVRSAVICLVPAPRVLESWELPFLPFGKS--IWIAVVI 102
           +  + SW+  W  +D     V+++ ++++ LV     L+S ++P + + K+  +W+A  +
Sbjct: 212 LVVMLSWFSFWLGLDAIPGRVALLVTSMLTLVTMFTGLKS-DIPPVAYVKALDVWMAGCM 270

Query: 103 TFVYASIG 110
            FV+A++G
Sbjct: 271 MFVFAALG 278


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 26.2 bits (55), Expect = 0.39
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 283 YTEKLSELIGRLHQSGLLLAWESQVPTLSHQ 313
           Y EKLSEL+G    S +L   +  +  + H+
Sbjct: 484 YAEKLSELLGHAFHSQVLSMSDYDISNIEHE 514


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 29/104 (27%), Positives = 43/104 (41%), Gaps = 10/104 (9%)

Query: 222 SFEELQRRSFL-----RKMAFSLEELPAGTFAIGEYLSKEAVQDMQ-LMLEFFYFDHCVA 275
           +FEE+Q +  +     R+   SL E  A    I   L  + +  +Q L L   Y D    
Sbjct: 247 TFEEIQNQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLATRYIDFLFQ 306

Query: 276 MLHKNSPYTEKLSELIGRLHQSGLLLAWESQVPTLSHQCKYVRY 319
           +LH N   TE   +   R  +S +L A E      S  C Y+ +
Sbjct: 307 VLHCNMENTEGADDASERNPRSAVLAARE----ITSSSCSYMAH 346


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 187 NSRMEWGANHEAWTFSLALSSEPVAKKLIKQFKIYS 222
           NSR+E G N     FS + +S  V  + +K F I S
Sbjct: 235 NSRLEPGTNKNGKFFSRSSTSRIVISESLKHFTIQS 270


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 25.8 bits (54), Expect = 0.51
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 192 WGANHEAWTFSLALSSEPVAKKLIKQFKIYS-FEELQRRSFLRKMAFSLEELPAGTFAIG 250
           W   H ++   L L  E   K  I  + +Y+    L++R  L+K  F++E L     A+ 
Sbjct: 438 WLPVHTSYKSGLNLEQEK--KDSISHYHLYTNLTALRKRDVLKKGNFTIEILNKTVLAVV 495

Query: 251 EYLSKEAV 258
               +EAV
Sbjct: 496 RQSEEEAV 503


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 4/36 (11%)

Query: 20  VDLWG---EIYENETGIGVIGSVVEGRSDFGIAALY 52
           VD +G   ++Y  + G+ V+G++V+G  D     LY
Sbjct: 343 VDSYGNHVKLYTKQ-GLNVLGNIVQGNGDSVNVQLY 377


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.136    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,302
Number of Sequences: 429
Number of extensions: 3626
Number of successful extensions: 16
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 7
length of query: 325
length of database: 140,377
effective HSP length: 58
effective length of query: 267
effective length of database: 115,495
effective search space: 30837165
effective search space used: 30837165
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 44 (21.8 bits)