Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
(449 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69883-5|CAA93739.2| 260|Caenorhabditis elegans Hypothetical pr... 124 1e-28
U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical pr... 95 1e-19
AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical... 73 5e-13
Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 65 8e-11
AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 65 8e-11
AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical ... 59 7e-09
Z78060-1|CAB01491.1| 83|Caenorhabditis elegans Hypothetical pr... 50 4e-06
Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical pr... 46 5e-05
Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical pr... 46 7e-05
AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative tran... 46 7e-05
AC024848-5|AAK68545.1| 254|Caenorhabditis elegans Hypothetical ... 40 0.005
U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical pr... 36 0.058
Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical pr... 34 0.18
Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 34 0.18
Z77663-16|CAB54256.5| 500|Caenorhabditis elegans Hypothetical p... 30 2.9
AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical ... 30 2.9
U97001-4|AAM45354.1| 86|Caenorhabditis elegans Hypothetical pr... 29 5.0
U55854-11|AAT81209.1| 570|Caenorhabditis elegans Map kinase pro... 29 5.0
U55854-10|AAN60533.1| 426|Caenorhabditis elegans Map kinase pro... 29 5.0
U55854-9|AAA98016.3| 605|Caenorhabditis elegans Map kinase prot... 29 5.0
Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 29 8.8
>Z69883-5|CAA93739.2| 260|Caenorhabditis elegans Hypothetical
protein C27C12.6 protein.
Length = 260
Score = 124 bits (299), Expect = 1e-28
Identities = 79/192 (41%), Positives = 107/192 (55%), Gaps = 27/192 (14%)
Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAED 66
R R PKCARCRNHGL+S L+GHK+ C Y+ C C KC LI ERQR+MAAQVALKR+QA ED
Sbjct: 16 RERKPKCARCRNHGLVSWLKGHKRHCKYKECACEKCNLIAERQRVMAAQVALKRRQATED 75
Query: 67 KIALHLASVETGTPLESLPPGRIYGMRVTXXXXXXXXXXXXXXXXQIPIHIDSETSDSLP 126
IAL L V G ++ LP G ++ + ++D E + P
Sbjct: 76 AIALGL-RVVAGQAIDRLPQGPVWN--------------TAGGEDEDMDYLDEEIEEKPP 120
Query: 127 DCSNVSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKRSVLELVLRR 186
+ VS + V L+ + E T E S + +E+L LF ++ VLELVL
Sbjct: 121 --TPVSEELV-------PLKRKKVEETYELS---SFSPIELLMTLFCEHEKHVLELVLEA 168
Query: 187 CNHDLLRAVEHF 198
C+ ++L+A+EHF
Sbjct: 169 CHGNVLQAIEHF 180
>U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical
protein F10C1.5 protein.
Length = 280
Score = 94.7 bits (225), Expect = 1e-19
Identities = 40/64 (62%), Positives = 50/64 (78%)
Query: 9 RVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKI 68
R PKCARCRNHG S+L+GHK+ C ++ C C KC LI ERQR+MAAQVAL+RQQ+ E++
Sbjct: 29 RTPKCARCRNHGTTSALKGHKRYCQWKDCMCAKCTLIAERQRVMAAQVALRRQQSQEERD 88
Query: 69 ALHL 72
A L
Sbjct: 89 ARDL 92
>AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical
protein Y43F8C.10 protein.
Length = 250
Score = 72.5 bits (170), Expect = 5e-13
Identities = 27/59 (45%), Positives = 41/59 (69%)
Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAE 65
+ R P C RC H +++ L+GHK+AC +R C C KC ++ ERQ++MA Q+ L+R+Q E
Sbjct: 111 KERRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQIKLRRRQKRE 169
Score = 52.4 bits (120), Expect = 6e-07
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 6 GRARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
G RV C RC NHGL + HK +C +R CQC C +++ R+++
Sbjct: 12 GEKRVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQL 57
>Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical
protein Y53C12B.5a protein.
Length = 290
Score = 65.3 bits (152), Expect = 8e-11
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 7 RARVPKCARCRNHGLISSLRGHKKA-CAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62
R R P CARC HG++ LRGHK+ C + C+C C L++ R+ +MAAQ+ L+R Q
Sbjct: 88 RVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQ 144
Score = 46.8 bits (106), Expect = 3e-05
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
C RC NHG + +GHK C Y C C +C ++++R+++
Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQL 66
>AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative
transcription factor MAB-3 protein.
Length = 290
Score = 65.3 bits (152), Expect = 8e-11
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 7 RARVPKCARCRNHGLISSLRGHKKA-CAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62
R R P CARC HG++ LRGHK+ C + C+C C L++ R+ +MAAQ+ L+R Q
Sbjct: 88 RVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQ 144
Score = 46.8 bits (106), Expect = 3e-05
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
C RC NHG + +GHK C Y C C +C ++++R+++
Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQL 66
>AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical
protein T22H9.4 protein.
Length = 369
Score = 58.8 bits (136), Expect = 7e-09
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 7/59 (11%)
Query: 9 RVPK-----CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62
R+PK C C+ HG+ RGH C YR C+C +C L+++R+ IM+ Q+ L+R+Q
Sbjct: 42 RIPKDVKRHCGMCKQHGVFVETRGH--TCEYRSCECEQCDLVRKRREIMSTQIRLRREQ 98
Score = 46.8 bits (106), Expect = 3e-05
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
C +C+NH ++ + HKK C Y C+C +C LI R+ +
Sbjct: 137 CQKCKNHNVLVWKKNHKKECQYSSCECQQCNLIDSRRAL 175
>Z78060-1|CAB01491.1| 83|Caenorhabditis elegans Hypothetical
protein C34D1.1 protein.
Length = 83
Score = 49.6 bits (113), Expect = 4e-06
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 3 NNSGRARVPKCARCRNHGLISSLRGHKKACAYRHCQCPK 41
N S RVP C +C HG S L+GHK++C +R C C K
Sbjct: 30 NPSYSKRVPNCQKCGQHGRKSRLKGHKRSCPFRECPCAK 68
>Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical
protein C34D1.2 protein.
Length = 114
Score = 46.0 bits (104), Expect = 5e-05
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAED 66
+ ++ C RC NH + + HK C Y C C KCGL+ E++RI+ ++ Q E+
Sbjct: 37 KKKIYYCQRCLNHDVPRPRKNHKCECPYADCTCEKCGLV-EKRRILNIRLQNYNQFNIEN 95
Query: 67 KIALHLASVE 76
+ L VE
Sbjct: 96 ENDSKLIIVE 105
>Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical
protein C32C4.5a protein.
Length = 175
Score = 45.6 bits (103), Expect = 7e-05
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 13 CARCRNHGLISS-LRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKR-QQAAEDKIAL 70
C C NHG+ + +GHK+ C YR C C C L +R+ + + LK + + A
Sbjct: 8 CQLCANHGIFNQPKKGHKQKCPYRTCPCSLCALNTKRRALDQIERQLKHTNEPMTGQTAT 67
Query: 71 HLASVETGTPLESLPP 86
+AS PL P
Sbjct: 68 SMASPTPECPLSPTTP 83
>AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative
transcription factor MAB-23 protein.
Length = 175
Score = 45.6 bits (103), Expect = 7e-05
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 13 CARCRNHGLISS-LRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKR-QQAAEDKIAL 70
C C NHG+ + +GHK+ C YR C C C L +R+ + + LK + + A
Sbjct: 8 CQLCANHGIFNQPKKGHKQKCPYRTCPCSLCALNTKRRALDQIERQLKHTNEPMTGQTAT 67
Query: 71 HLASVETGTPLESLPP 86
+AS PL P
Sbjct: 68 SMASPTPECPLSPTTP 83
>AC024848-5|AAK68545.1| 254|Caenorhabditis elegans Hypothetical
protein Y67D8A.3 protein.
Length = 254
Score = 39.5 bits (88), Expect = 0.005
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLI 45
C +C HG + L+GH C Y+ C C C +
Sbjct: 31 CRKCEGHGTYAILKGHAGVCPYKDCSCGTCASV 63
>U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical
protein K08B12.2a protein.
Length = 449
Score = 35.9 bits (79), Expect = 0.058
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKC 42
C +C HG L+GH C + +C C C
Sbjct: 61 CRKCEGHGQQVVLKGHASRCPFNNCSCKTC 90
>Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical
protein F13G11.1b protein.
Length = 470
Score = 34.3 bits (75), Expect = 0.18
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKC 42
+ R+ C +C HG L+ H C Y C C C
Sbjct: 39 KGRILYCRKCEGHGEKVILKNHSPQCPYILCNCKSC 74
>Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical
protein F13G11.1a protein.
Length = 510
Score = 34.3 bits (75), Expect = 0.18
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKC 42
+ R+ C +C HG L+ H C Y C C C
Sbjct: 79 KGRILYCRKCEGHGEKVILKNHSPQCPYILCNCKSC 114
>Z77663-16|CAB54256.5| 500|Caenorhabditis elegans Hypothetical
protein F53F4.14 protein.
Length = 500
Score = 30.3 bits (65), Expect = 2.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 131 VSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKR 177
++ S+G G ++ D+S ++E V LE +R+ F KK+
Sbjct: 314 IAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQ 360
>AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical
protein F53F4.14 protein.
Length = 500
Score = 30.3 bits (65), Expect = 2.9
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 131 VSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKR 177
++ S+G G ++ D+S ++E V LE +R+ F KK+
Sbjct: 314 IAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQ 360
>U97001-4|AAM45354.1| 86|Caenorhabditis elegans Hypothetical
protein K08B12.2b protein.
Length = 86
Score = 29.5 bits (63), Expect = 5.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 13 CARCRNHGLISSLRGHKKACAYRHC 37
C +C HG L+GH C + +C
Sbjct: 61 CRKCEGHGQQVVLKGHASRCPFNNC 85
>U55854-11|AAT81209.1| 570|Caenorhabditis elegans Map kinase
protein 2, isoform c protein.
Length = 570
Score = 29.5 bits (63), Expect = 5.0
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375
+N +R DF Y + V GH Q S+ YR +FS + +TK+
Sbjct: 155 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 214
Query: 376 YWEDKTLFIE 385
W +F E
Sbjct: 215 LWSAGCIFAE 224
>U55854-10|AAN60533.1| 426|Caenorhabditis elegans Map kinase
protein 2, isoform b protein.
Length = 426
Score = 29.5 bits (63), Expect = 5.0
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375
+N +R DF Y + V GH Q S+ YR +FS + +TK+
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249
Query: 376 YWEDKTLFIE 385
W +F E
Sbjct: 250 LWSAGCIFAE 259
>U55854-9|AAA98016.3| 605|Caenorhabditis elegans Map kinase protein
2, isoform a protein.
Length = 605
Score = 29.5 bits (63), Expect = 5.0
Identities = 19/70 (27%), Positives = 28/70 (40%)
Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375
+N +R DF Y + V GH Q S+ YR +FS + +TK+
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249
Query: 376 YWEDKTLFIE 385
W +F E
Sbjct: 250 LWSAGCIFAE 259
>Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical
protein F09B9.1 protein.
Length = 710
Score = 28.7 bits (61), Expect = 8.8
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)
Query: 399 IVLSRQNLLNVDAAALFKGIPGADQKPECPEEIKHWLQSIE----VSSAKLRKK 448
++LS + +D +FK P P+C + + W++S+E VS A L+K+
Sbjct: 10 LLLSTSGAVTLDWKDIFKPKPLHGLSPQCLNDTQTWIKSLELFAGVSEACLKKQ 63
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,258,340
Number of Sequences: 27539
Number of extensions: 401431
Number of successful extensions: 976
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 26
length of query: 449
length of database: 12,573,161
effective HSP length: 84
effective length of query: 365
effective length of database: 10,259,885
effective search space: 3744858025
effective search space used: 3744858025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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