Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
         (449 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          34   0.003
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   4.0  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    22   9.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   9.1  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   9.1  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   9.1  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 33.9 bits (74), Expect = 0.003
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 36 HCQCPKCGLIKERQRIMAAQVALKRQQAAEDKIALHLA 73
          +C C KC +   RQ++M   + LKR   A+DK+ + +A
Sbjct: 3  YCTCEKCKITANRQQVMRQNMKLKR-HLAQDKVKVRVA 39


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 113 IPIHIDSETSDSLPDCSNVSPDSVGNSSGVSQLR 146
           I +++  E++ SL    NVS  +  N+S  SQL+
Sbjct: 705 IILNVPKESTQSLTTTGNVSYLTTNNTSNNSQLQ 738


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 338 IYTNIKAVDGHALQGASSIRYRRTIPIFSPY 368
           IY    A     L    S+ Y   IP+FSP+
Sbjct: 136 IYVQPSATFSLDLNKVVSVFYTAVIPMFSPF 166


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 218 ASVSSSEDPESRWSAFRPLVYW 239
           + VS S   ES W  F  ++ W
Sbjct: 389 SEVSKSRTKESAWRHFAAIIEW 410


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 399 IVLSRQNLLNVDAAALFKGIPGADQKPECPEEIKHWLQSIEVSSA 443
           +++   N L+     +   I G D KP+  E  ++ + S+ + S+
Sbjct: 263 VIIGGSNGLDTSKVHIIDSICGIDSKPDYRELTEYSVTSVRLISS 307


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 9.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 44  LIKERQRIMAAQVALKRQQAAEDKIALHL 72
           +IK RQ+  A  +A + + AA+ K+  HL
Sbjct: 408 VIKFRQKQRAEILAKEHKAAADQKLEKHL 436


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,694
Number of Sequences: 429
Number of extensions: 4674
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 449
length of database: 140,377
effective HSP length: 60
effective length of query: 389
effective length of database: 114,637
effective search space: 44593793
effective search space used: 44593793
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)