GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
         (449 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           22   7.7  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   7.7  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   7.7  

>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 14/53 (26%), Positives = 23/53 (43%)

Query: 153 TVEAEGAVSTAGLEMLRKLFPGKKRSVLELVLRRCNHDLLRAVEHFNATHGRD 205
           T +   A+S     +L +  P  +R   E + R+     LRA+E +    G D
Sbjct: 124 TTDNVAAISGVLRSLLDRPLPAPERPSFEGLKRQNPVKFLRAIEEYGRFFGLD 176


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 418  IPGADQKPECPEEIK 432
            IP   +KP  PEE+K
Sbjct: 1378 IPPTSEKPPLPEELK 1392


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 7.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 121 TSDSLPDCSNVSPDSVGNSSGVS 143
           +S+S PDCS  + D  G +S V+
Sbjct: 90  SSNSKPDCSKGNADQNGYASVVA 112


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,749
Number of Sequences: 317
Number of extensions: 3731
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 449
length of database: 114,650
effective HSP length: 59
effective length of query: 390
effective length of database: 95,947
effective search space: 37419330
effective search space used: 37419330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)