GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    29   1.0  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    28   2.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   4.0  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    27   4.0  

>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 338 IYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLVYWEDKTLFIEQKFITLNDGFVR 397
           +YT  + V GH L  +S IRY   I I   +    K V +   T F  + F  LN     
Sbjct: 158 LYTEKRMVRGHGLTISSQIRYVYYIEILKQFPNYLKAVEFNTGTTFF-KSFKCLNIKKNS 216

Query: 398 AIVLSRQNL---LNVDAAALFK 416
           +++LS        N++  AL+K
Sbjct: 217 SLILSLHAFSKGRNINPVALWK 238


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 34/134 (25%), Positives = 56/134 (41%), Gaps = 11/134 (8%)

Query: 165 LEMLRKLFPGKKRSVLELVLRRCNHDLLRAVEHFNATHGRDKIPESTTGLGFEASVSSSE 224
           +++LR+L    + S L+++    N+ +   VE  +    R K PE T    +++S + S 
Sbjct: 189 VDVLRRLSTEPRYS-LDVLRSSLNNSI---VEQHSEVSLRLKAPELTRTHSYQSSATLSI 244

Query: 225 DPESRWSAFRPLVYWDDRSLFLEHKVITLCDARVRSFIVSRQHVIGENAQSASSLLEGLP 284
           D + R        Y+     FL      L D  +R  IV RQ  +       + L   LP
Sbjct: 245 DEQRRVLRSN---YFQQEIQFL----FALQDISIRLIIVPRQARLSSLRAELALLNNNLP 297

Query: 285 GSEVRPVCREYLKD 298
                P+ R Y K+
Sbjct: 298 ADVNIPLLRSYHKE 311


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)

Query: 283  LPGSEVRPVCREYLKDWFKSFCTTQDVD 310
            +P   +R   REYL+ W++ +C  QD D
Sbjct: 2183 IPSLTIRE-SREYLQKWYEEWCGKQDWD 2209


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 305 TTQDVDIFLRHMNNARYVRELDFARFHFYDRTGIYTNIKAVDG---HALQGASSIRY 358
           TT+++++ LR       ++ L      F   T I   +KAV+G   H L   S IRY
Sbjct: 512 TTEELELILRQYGEIESIKYLKNRSSGFVAYTNISNAMKAVNGLPIHPLFKKSKIRY 568


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,878,915
Number of Sequences: 5004
Number of extensions: 72249
Number of successful extensions: 188
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 4
length of query: 449
length of database: 2,362,478
effective HSP length: 75
effective length of query: 374
effective length of database: 1,987,178
effective search space: 743204572
effective search space used: 743204572
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)