GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,198...    31   2.5  
01_06_1733 + 39537618-39537722,39537865-39538028,39539796-395401...    29   5.7  
01_01_0138 + 1253256-1253534,1253625-1254359                           29   5.7  
04_04_0725 - 27581658-27581663,27582379-27582481,27582697-275830...    29   7.6  
01_07_0374 + 43144861-43144998,43145695-43145794,43146499-431466...    29   7.6  

>02_01_0297 + 1986422-1986570,1986960-1987065,1987188-1987464,
            1987805-1988305,1989010-1990016,1990131-1990781,
            1991337-1991633,1991735-1992013,1993070-1993198,
            1993291-1993491,1993651-1993793,1993878-1994190,
            1994349-1994488,1995320-1995398,1995484-1995753,
            1996208-1996425,1996521-1996632
          Length = 1623

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 13   CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKIALHL 72
            C  C+    +  L  H +AC    C  P+C  +KE  R +  Q   +R+ A  + +    
Sbjct: 1559 CVLCKKMWYMLQL--HARACRDSGCNVPRCRDLKEHLRRLQQQSDSRRRAAVNEMMRQRA 1616

Query: 73   ASV 75
            A V
Sbjct: 1617 AEV 1619


>01_06_1733 +
           39537618-39537722,39537865-39538028,39539796-39540102,
           39540914-39541221,39541421-39541580
          Length = 347

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 1   MLNNSGRARVPKCARCRNHGLISSLRGHKKACAYR--HCQCPKCGLIKERQRIMAAQVAL 58
           ++ +  R     C RC+   +   LR H   C     HC  P C   + ++   AA  A 
Sbjct: 253 LIRHFSRCHRTSCPRCQR--MWQLLRLHAALCDLPDGHCNTPLCMQFRRKEEEKAAAKAK 310

Query: 59  KRQQAAEDKIALHLASVETGTPLESL 84
            +    +DK  L +  V     + SL
Sbjct: 311 AKAGDDDDKWGLLVKKVRVARAMSSL 336


>01_01_0138 + 1253256-1253534,1253625-1254359
          Length = 337

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)

Query: 16  CRNHGLISSLRGHKKACAYRHCQC--PKCGLIKERQRIMAAQVA 57
           CR++     +  H++AC +  C C  P+C  +     ++A  VA
Sbjct: 149 CRSYVAYHDVAAHQRACPHAPCSCSEPRCDFLGSPPMLLAHLVA 192


>04_04_0725 -
           27581658-27581663,27582379-27582481,27582697-27583025,
           27583263-27583365,27583490-27583671,27584135-27584324,
           27584570-27584665,27584960-27585054,27585396-27585590
          Length = 432

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 5/88 (5%)

Query: 243 SLFLEHKVITLCDARVRSFIVSRQHVIGENAQSASSLLEGLPGSEVRPVCREYLKDWFKS 302
           SLF  H V     +R+RS   S+QHVI     S+ S+L    G+ V+    E +  W  S
Sbjct: 42  SLFTGHIVTDADWSRIRSRWRSKQHVI---CLSSWSMLPYNVGN-VQVRNNEPINIWKSS 97

Query: 303 FCTTQDVDIFLRHMNNARYVRELDFARF 330
           F  T D  +  R +N    V ELD   F
Sbjct: 98  FQIT-DAVVVARILNATLVVPELDHHSF 124


>01_07_0374 +
           43144861-43144998,43145695-43145794,43146499-43146651,
           43147383-43150081
          Length = 1029

 Score = 29.1 bits (62), Expect = 7.6
 Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 121 TSDSLPDCSNVSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAG--LEMLRKLFPGKKR- 177
           +SD L  C + +P +V +  G+ + + GQ+   VE E  V        +L +    K+R 
Sbjct: 632 SSDDLGGCDDEAPAAVDDPDGMRKQKKGQEGEGVEEEKKVILVAEYRALLEENKDAKRRL 691

Query: 178 SVLELVLRRCNHDL 191
           + +E   + C H++
Sbjct: 692 AEVEKTNQECMHEI 705


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,190,947
Number of Sequences: 37544
Number of extensions: 467855
Number of successful extensions: 1204
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 7
length of query: 449
length of database: 14,793,348
effective HSP length: 84
effective length of query: 365
effective length of database: 11,639,652
effective search space: 4248472980
effective search space used: 4248472980
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)