GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
         (449 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    88   4e-19
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    88   4e-19
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    85   3e-18
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    85   3e-18
AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative cell-adh...    25   4.2  
AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...    24   9.7  

>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 88.2 bits (209), Expect = 4e-19
 Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3   NNSGRARVP-KCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQ 61
           NNS   R P  CARCRNHGL   L+GHK+ C YR CQC KC L  ERQR+MA Q AL+R 
Sbjct: 30  NNSLNPRTPPNCARCRNHGLKIGLKGHKRYCKYRACQCEKCCLTAERQRVMALQTALRRA 89

Query: 62  QAAEDKIALHLASVETGTP 80
           Q  +++ AL+   V    P
Sbjct: 90  QTQDEQRALNEGEVPPEPP 108


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 88.2 bits (209), Expect = 4e-19
 Identities = 42/79 (53%), Positives = 50/79 (63%), Gaps = 1/79 (1%)

Query: 3   NNSGRARVP-KCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQ 61
           NNS   R P  CARCRNHGL   L+GHK+ C YR CQC KC L  ERQR+MA Q AL+R 
Sbjct: 30  NNSLNPRTPPNCARCRNHGLKIGLKGHKRYCKYRACQCEKCCLTAERQRVMALQTALRRA 89

Query: 62  QAAEDKIALHLASVETGTP 80
           Q  +++ AL+   V    P
Sbjct: 90  QTQDEQRALNEGEVPPEPP 108


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 3   NNSGRARVP-KCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQ 61
           NNS   R P  CARCRNHGL   L+GHK+ C YR C C KC L  ERQR+MA Q AL+R 
Sbjct: 30  NNSLNPRTPPNCARCRNHGLKIGLKGHKRYCKYRTCHCEKCCLTAERQRVMALQTALRRA 89

Query: 62  QAAEDKIALHLASV 75
           Q  +++ AL+   V
Sbjct: 90  QTQDEQRALNEGEV 103


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 85.4 bits (202), Expect = 3e-18
 Identities = 40/74 (54%), Positives = 48/74 (64%), Gaps = 1/74 (1%)

Query: 3   NNSGRARVP-KCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQ 61
           NNS   R P  CARCRNHGL   L+GHK+ C YR C C KC L  ERQR+MA Q AL+R 
Sbjct: 30  NNSLNPRTPPNCARCRNHGLKIGLKGHKRYCKYRTCHCEKCCLTAERQRVMALQTALRRA 89

Query: 62  QAAEDKIALHLASV 75
           Q  +++ AL+   V
Sbjct: 90  QTQDEQRALNEGEV 103


>AJ439060-11|CAD27762.1| 1881|Anopheles gambiae putative
           cell-adhesion protein protein.
          Length = 1881

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)

Query: 320 RYVRELDFARFHFYDRTGIYTNIKAVDGHALQG 352
           R  R LD+ R HFY     + N+ AVD  A+QG
Sbjct: 230 RLARALDYERQHFY-----HINVLAVD-RAIQG 256


>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 342 IKAVDGHALQGASSIRYRRTIPIFSPYKVETKLVYWED 379
           I  + G   +G   I++   +PIFS  K E +   +ED
Sbjct: 49  IGKMGGTQKRGEKKIKFEEFLPIFSQVKKEKEQGCFED 86


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 425,670
Number of Sequences: 2123
Number of extensions: 15547
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 6
length of query: 449
length of database: 516,269
effective HSP length: 66
effective length of query: 383
effective length of database: 376,151
effective search space: 144065833
effective search space used: 144065833
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 49 (23.8 bits)