BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding, IPR009060|UBA-like, IPR005173|DMRTA motif (449 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z69883-5|CAA93739.2| 260|Caenorhabditis elegans Hypothetical pr... 124 1e-28 U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical pr... 95 1e-19 AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical... 73 5e-13 Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical pr... 65 8e-11 AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative tran... 65 8e-11 AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical ... 59 7e-09 Z78060-1|CAB01491.1| 83|Caenorhabditis elegans Hypothetical pr... 50 4e-06 Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical pr... 46 5e-05 Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical pr... 46 7e-05 AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative tran... 46 7e-05 AC024848-5|AAK68545.1| 254|Caenorhabditis elegans Hypothetical ... 40 0.005 U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical pr... 36 0.058 Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical pr... 34 0.18 Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical pr... 34 0.18 Z77663-16|CAB54256.5| 500|Caenorhabditis elegans Hypothetical p... 30 2.9 AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical ... 30 2.9 U97001-4|AAM45354.1| 86|Caenorhabditis elegans Hypothetical pr... 29 5.0 U55854-11|AAT81209.1| 570|Caenorhabditis elegans Map kinase pro... 29 5.0 U55854-10|AAN60533.1| 426|Caenorhabditis elegans Map kinase pro... 29 5.0 U55854-9|AAA98016.3| 605|Caenorhabditis elegans Map kinase prot... 29 5.0 Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 29 8.8 >Z69883-5|CAA93739.2| 260|Caenorhabditis elegans Hypothetical protein C27C12.6 protein. Length = 260 Score = 124 bits (299), Expect = 1e-28 Identities = 79/192 (41%), Positives = 107/192 (55%), Gaps = 27/192 (14%) Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAED 66 R R PKCARCRNHGL+S L+GHK+ C Y+ C C KC LI ERQR+MAAQVALKR+QA ED Sbjct: 16 RERKPKCARCRNHGLVSWLKGHKRHCKYKECACEKCNLIAERQRVMAAQVALKRRQATED 75 Query: 67 KIALHLASVETGTPLESLPPGRIYGMRVTXXXXXXXXXXXXXXXXQIPIHIDSETSDSLP 126 IAL L V G ++ LP G ++ + ++D E + P Sbjct: 76 AIALGL-RVVAGQAIDRLPQGPVWN--------------TAGGEDEDMDYLDEEIEEKPP 120 Query: 127 DCSNVSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKRSVLELVLRR 186 + VS + V L+ + E T E S + +E+L LF ++ VLELVL Sbjct: 121 --TPVSEELV-------PLKRKKVEETYELS---SFSPIELLMTLFCEHEKHVLELVLEA 168 Query: 187 CNHDLLRAVEHF 198 C+ ++L+A+EHF Sbjct: 169 CHGNVLQAIEHF 180 >U49831-8|AAA93409.2| 280|Caenorhabditis elegans Hypothetical protein F10C1.5 protein. Length = 280 Score = 94.7 bits (225), Expect = 1e-19 Identities = 40/64 (62%), Positives = 50/64 (78%) Query: 9 RVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKI 68 R PKCARCRNHG S+L+GHK+ C ++ C C KC LI ERQR+MAAQVAL+RQQ+ E++ Sbjct: 29 RTPKCARCRNHGTTSALKGHKRYCQWKDCMCAKCTLIAERQRVMAAQVALRRQQSQEERD 88 Query: 69 ALHL 72 A L Sbjct: 89 ARDL 92 >AL032637-20|CAA21612.2| 250|Caenorhabditis elegans Hypothetical protein Y43F8C.10 protein. Length = 250 Score = 72.5 bits (170), Expect = 5e-13 Identities = 27/59 (45%), Positives = 41/59 (69%) Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAE 65 + R P C RC H +++ L+GHK+AC +R C C KC ++ ERQ++MA Q+ L+R+Q E Sbjct: 111 KERRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQIKLRRRQKRE 169 Score = 52.4 bits (120), Expect = 6e-07 Identities = 19/46 (41%), Positives = 28/46 (60%) Query: 6 GRARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51 G RV C RC NHGL + HK +C +R CQC C +++ R+++ Sbjct: 12 GEKRVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQL 57 >Z99278-5|CAB16489.1| 290|Caenorhabditis elegans Hypothetical protein Y53C12B.5a protein. Length = 290 Score = 65.3 bits (152), Expect = 8e-11 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Query: 7 RARVPKCARCRNHGLISSLRGHKKA-CAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62 R R P CARC HG++ LRGHK+ C + C+C C L++ R+ +MAAQ+ L+R Q Sbjct: 88 RVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQ 144 Score = 46.8 bits (106), Expect = 3e-05 Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51 C RC NHG + +GHK C Y C C +C ++++R+++ Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQL 66 >AF022388-1|AAC38956.1| 290|Caenorhabditis elegans putative transcription factor MAB-3 protein. Length = 290 Score = 65.3 bits (152), Expect = 8e-11 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%) Query: 7 RARVPKCARCRNHGLISSLRGHKKA-CAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62 R R P CARC HG++ LRGHK+ C + C+C C L++ R+ +MAAQ+ L+R Q Sbjct: 88 RVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQ 144 Score = 46.8 bits (106), Expect = 3e-05 Identities = 15/39 (38%), Positives = 25/39 (64%) Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51 C RC NHG + +GHK C Y C C +C ++++R+++ Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQL 66 >AF101315-1|AAC69225.2| 369|Caenorhabditis elegans Hypothetical protein T22H9.4 protein. Length = 369 Score = 58.8 bits (136), Expect = 7e-09 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 7/59 (11%) Query: 9 RVPK-----CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62 R+PK C C+ HG+ RGH C YR C+C +C L+++R+ IM+ Q+ L+R+Q Sbjct: 42 RIPKDVKRHCGMCKQHGVFVETRGH--TCEYRSCECEQCDLVRKRREIMSTQIRLRREQ 98 Score = 46.8 bits (106), Expect = 3e-05 Identities = 15/39 (38%), Positives = 24/39 (61%) Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51 C +C+NH ++ + HKK C Y C+C +C LI R+ + Sbjct: 137 CQKCKNHNVLVWKKNHKKECQYSSCECQQCNLIDSRRAL 175 >Z78060-1|CAB01491.1| 83|Caenorhabditis elegans Hypothetical protein C34D1.1 protein. Length = 83 Score = 49.6 bits (113), Expect = 4e-06 Identities = 19/39 (48%), Positives = 24/39 (61%) Query: 3 NNSGRARVPKCARCRNHGLISSLRGHKKACAYRHCQCPK 41 N S RVP C +C HG S L+GHK++C +R C C K Sbjct: 30 NPSYSKRVPNCQKCGQHGRKSRLKGHKRSCPFRECPCAK 68 >Z78060-2|CAB01490.1| 114|Caenorhabditis elegans Hypothetical protein C34D1.2 protein. Length = 114 Score = 46.0 bits (104), Expect = 5e-05 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAED 66 + ++ C RC NH + + HK C Y C C KCGL+ E++RI+ ++ Q E+ Sbjct: 37 KKKIYYCQRCLNHDVPRPRKNHKCECPYADCTCEKCGLV-EKRRILNIRLQNYNQFNIEN 95 Query: 67 KIALHLASVE 76 + L VE Sbjct: 96 ENDSKLIIVE 105 >Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical protein C32C4.5a protein. Length = 175 Score = 45.6 bits (103), Expect = 7e-05 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 13 CARCRNHGLISS-LRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKR-QQAAEDKIAL 70 C C NHG+ + +GHK+ C YR C C C L +R+ + + LK + + A Sbjct: 8 CQLCANHGIFNQPKKGHKQKCPYRTCPCSLCALNTKRRALDQIERQLKHTNEPMTGQTAT 67 Query: 71 HLASVETGTPLESLPP 86 +AS PL P Sbjct: 68 SMASPTPECPLSPTTP 83 >AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative transcription factor MAB-23 protein. Length = 175 Score = 45.6 bits (103), Expect = 7e-05 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%) Query: 13 CARCRNHGLISS-LRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKR-QQAAEDKIAL 70 C C NHG+ + +GHK+ C YR C C C L +R+ + + LK + + A Sbjct: 8 CQLCANHGIFNQPKKGHKQKCPYRTCPCSLCALNTKRRALDQIERQLKHTNEPMTGQTAT 67 Query: 71 HLASVETGTPLESLPP 86 +AS PL P Sbjct: 68 SMASPTPECPLSPTTP 83 >AC024848-5|AAK68545.1| 254|Caenorhabditis elegans Hypothetical protein Y67D8A.3 protein. Length = 254 Score = 39.5 bits (88), Expect = 0.005 Identities = 12/33 (36%), Positives = 17/33 (51%) Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLI 45 C +C HG + L+GH C Y+ C C C + Sbjct: 31 CRKCEGHGTYAILKGHAGVCPYKDCSCGTCASV 63 >U97001-3|AAB52258.2| 449|Caenorhabditis elegans Hypothetical protein K08B12.2a protein. Length = 449 Score = 35.9 bits (79), Expect = 0.058 Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKC 42 C +C HG L+GH C + +C C C Sbjct: 61 CRKCEGHGQQVVLKGHASRCPFNNCSCKTC 90 >Z83317-2|CAB05899.1| 470|Caenorhabditis elegans Hypothetical protein F13G11.1b protein. Length = 470 Score = 34.3 bits (75), Expect = 0.18 Identities = 12/36 (33%), Positives = 16/36 (44%) Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKC 42 + R+ C +C HG L+ H C Y C C C Sbjct: 39 KGRILYCRKCEGHGEKVILKNHSPQCPYILCNCKSC 74 >Z83317-1|CAB05898.1| 510|Caenorhabditis elegans Hypothetical protein F13G11.1a protein. Length = 510 Score = 34.3 bits (75), Expect = 0.18 Identities = 12/36 (33%), Positives = 16/36 (44%) Query: 7 RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKC 42 + R+ C +C HG L+ H C Y C C C Sbjct: 79 KGRILYCRKCEGHGEKVILKNHSPQCPYILCNCKSC 114 >Z77663-16|CAB54256.5| 500|Caenorhabditis elegans Hypothetical protein F53F4.14 protein. Length = 500 Score = 30.3 bits (65), Expect = 2.9 Identities = 13/47 (27%), Positives = 24/47 (51%) Query: 131 VSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKR 177 ++ S+G G ++ D+S ++E V LE +R+ F KK+ Sbjct: 314 IAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQ 360 >AL021346-4|CAB54259.5| 500|Caenorhabditis elegans Hypothetical protein F53F4.14 protein. Length = 500 Score = 30.3 bits (65), Expect = 2.9 Identities = 13/47 (27%), Positives = 24/47 (51%) Query: 131 VSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKR 177 ++ S+G G ++ D+S ++E V LE +R+ F KK+ Sbjct: 314 IAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQ 360 >U97001-4|AAM45354.1| 86|Caenorhabditis elegans Hypothetical protein K08B12.2b protein. Length = 86 Score = 29.5 bits (63), Expect = 5.0 Identities = 9/25 (36%), Positives = 13/25 (52%) Query: 13 CARCRNHGLISSLRGHKKACAYRHC 37 C +C HG L+GH C + +C Sbjct: 61 CRKCEGHGQQVVLKGHASRCPFNNC 85 >U55854-11|AAT81209.1| 570|Caenorhabditis elegans Map kinase protein 2, isoform c protein. Length = 570 Score = 29.5 bits (63), Expect = 5.0 Identities = 19/70 (27%), Positives = 28/70 (40%) Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375 +N +R DF Y + V GH Q S+ YR +FS + +TK+ Sbjct: 155 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 214 Query: 376 YWEDKTLFIE 385 W +F E Sbjct: 215 LWSAGCIFAE 224 >U55854-10|AAN60533.1| 426|Caenorhabditis elegans Map kinase protein 2, isoform b protein. Length = 426 Score = 29.5 bits (63), Expect = 5.0 Identities = 19/70 (27%), Positives = 28/70 (40%) Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375 +N +R DF Y + V GH Q S+ YR +FS + +TK+ Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249 Query: 376 YWEDKTLFIE 385 W +F E Sbjct: 250 LWSAGCIFAE 259 >U55854-9|AAA98016.3| 605|Caenorhabditis elegans Map kinase protein 2, isoform a protein. Length = 605 Score = 29.5 bits (63), Expect = 5.0 Identities = 19/70 (27%), Positives = 28/70 (40%) Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375 +N +R DF Y + V GH Q S+ YR +FS + +TK+ Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249 Query: 376 YWEDKTLFIE 385 W +F E Sbjct: 250 LWSAGCIFAE 259 >Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical protein F09B9.1 protein. Length = 710 Score = 28.7 bits (61), Expect = 8.8 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%) Query: 399 IVLSRQNLLNVDAAALFKGIPGADQKPECPEEIKHWLQSIE----VSSAKLRKK 448 ++LS + +D +FK P P+C + + W++S+E VS A L+K+ Sbjct: 10 LLLSTSGAVTLDWKDIFKPKPLHGLSPQCLNDTQTWIKSLELFAGVSEACLKKQ 63 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.320 0.134 0.403 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,258,340 Number of Sequences: 27539 Number of extensions: 401431 Number of successful extensions: 976 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 948 Number of HSP's gapped (non-prelim): 26 length of query: 449 length of database: 12,573,161 effective HSP length: 84 effective length of query: 365 effective length of database: 10,259,885 effective search space: 3744858025 effective search space used: 3744858025 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 61 (28.7 bits)
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