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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
         (449 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical pr...   124   1e-28
U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical pr...    95   1e-19
AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical...    73   5e-13
Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical pr...    65   8e-11
AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative tran...    65   8e-11
AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical ...    59   7e-09
Z78060-1|CAB01491.1|   83|Caenorhabditis elegans Hypothetical pr...    50   4e-06
Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical pr...    46   5e-05
Z73905-5|CAD44103.1|  175|Caenorhabditis elegans Hypothetical pr...    46   7e-05
AF535153-1|AAN17799.1|  175|Caenorhabditis elegans putative tran...    46   7e-05
AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical ...    40   0.005
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    36   0.058
Z83317-2|CAB05899.1|  470|Caenorhabditis elegans Hypothetical pr...    34   0.18 
Z83317-1|CAB05898.1|  510|Caenorhabditis elegans Hypothetical pr...    34   0.18 
Z77663-16|CAB54256.5|  500|Caenorhabditis elegans Hypothetical p...    30   2.9  
AL021346-4|CAB54259.5|  500|Caenorhabditis elegans Hypothetical ...    30   2.9  
U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical pr...    29   5.0  
U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase pro...    29   5.0  
U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase pro...    29   5.0  
U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase prot...    29   5.0  
Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical pr...    29   8.8  

>Z69883-5|CAA93739.2|  260|Caenorhabditis elegans Hypothetical
           protein C27C12.6 protein.
          Length = 260

 Score =  124 bits (299), Expect = 1e-28
 Identities = 79/192 (41%), Positives = 107/192 (55%), Gaps = 27/192 (14%)

Query: 7   RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAED 66
           R R PKCARCRNHGL+S L+GHK+ C Y+ C C KC LI ERQR+MAAQVALKR+QA ED
Sbjct: 16  RERKPKCARCRNHGLVSWLKGHKRHCKYKECACEKCNLIAERQRVMAAQVALKRRQATED 75

Query: 67  KIALHLASVETGTPLESLPPGRIYGMRVTXXXXXXXXXXXXXXXXQIPIHIDSETSDSLP 126
            IAL L  V  G  ++ LP G ++                     +   ++D E  +  P
Sbjct: 76  AIALGL-RVVAGQAIDRLPQGPVWN--------------TAGGEDEDMDYLDEEIEEKPP 120

Query: 127 DCSNVSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKRSVLELVLRR 186
             + VS + V        L+  + E T E     S + +E+L  LF   ++ VLELVL  
Sbjct: 121 --TPVSEELV-------PLKRKKVEETYELS---SFSPIELLMTLFCEHEKHVLELVLEA 168

Query: 187 CNHDLLRAVEHF 198
           C+ ++L+A+EHF
Sbjct: 169 CHGNVLQAIEHF 180


>U49831-8|AAA93409.2|  280|Caenorhabditis elegans Hypothetical
          protein F10C1.5 protein.
          Length = 280

 Score = 94.7 bits (225), Expect = 1e-19
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query: 9  RVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKI 68
          R PKCARCRNHG  S+L+GHK+ C ++ C C KC LI ERQR+MAAQVAL+RQQ+ E++ 
Sbjct: 29 RTPKCARCRNHGTTSALKGHKRYCQWKDCMCAKCTLIAERQRVMAAQVALRRQQSQEERD 88

Query: 69 ALHL 72
          A  L
Sbjct: 89 ARDL 92


>AL032637-20|CAA21612.2|  250|Caenorhabditis elegans Hypothetical
           protein Y43F8C.10 protein.
          Length = 250

 Score = 72.5 bits (170), Expect = 5e-13
 Identities = 27/59 (45%), Positives = 41/59 (69%)

Query: 7   RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAE 65
           + R P C RC  H +++ L+GHK+AC +R C C KC ++ ERQ++MA Q+ L+R+Q  E
Sbjct: 111 KERRPNCQRCAQHSVVNRLKGHKRACPFRDCFCAKCQVVVERQKLMADQIKLRRRQKRE 169



 Score = 52.4 bits (120), Expect = 6e-07
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 6  GRARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
          G  RV  C RC NHGL    + HK +C +R CQC  C +++ R+++
Sbjct: 12 GEKRVYYCQRCLNHGLREKRKNHKLSCTFRFCQCSNCIMVERRRQL 57


>Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5a protein.
          Length = 290

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 7   RARVPKCARCRNHGLISSLRGHKKA-CAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62
           R R P CARC  HG++  LRGHK+  C +  C+C  C L++ R+ +MAAQ+ L+R Q
Sbjct: 88  RVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQ 144



 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
          C RC NHG +   +GHK  C Y  C C +C ++++R+++
Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQL 66


>AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative
           transcription factor MAB-3 protein.
          Length = 290

 Score = 65.3 bits (152), Expect = 8e-11
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 1/57 (1%)

Query: 7   RARVPKCARCRNHGLISSLRGHKKA-CAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62
           R R P CARC  HG++  LRGHK+  C +  C+C  C L++ R+ +MAAQ+ L+R Q
Sbjct: 88  RVRDPHCARCSAHGVLVPLRGHKRTMCQFVTCECTLCTLVEHRRNLMAAQIKLRRSQ 144



 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
          C RC NHG +   +GHK  C Y  C C +C ++++R+++
Sbjct: 28 CQRCLNHGELKPRKGHKPDCRYLKCPCRECTMVEQRRQL 66


>AF101315-1|AAC69225.2|  369|Caenorhabditis elegans Hypothetical
          protein T22H9.4 protein.
          Length = 369

 Score = 58.8 bits (136), Expect = 7e-09
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 7/59 (11%)

Query: 9  RVPK-----CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQ 62
          R+PK     C  C+ HG+    RGH   C YR C+C +C L+++R+ IM+ Q+ L+R+Q
Sbjct: 42 RIPKDVKRHCGMCKQHGVFVETRGH--TCEYRSCECEQCDLVRKRREIMSTQIRLRREQ 98



 Score = 46.8 bits (106), Expect = 3e-05
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 13  CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRI 51
           C +C+NH ++   + HKK C Y  C+C +C LI  R+ +
Sbjct: 137 CQKCKNHNVLVWKKNHKKECQYSSCECQQCNLIDSRRAL 175


>Z78060-1|CAB01491.1|   83|Caenorhabditis elegans Hypothetical
          protein C34D1.1 protein.
          Length = 83

 Score = 49.6 bits (113), Expect = 4e-06
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 3  NNSGRARVPKCARCRNHGLISSLRGHKKACAYRHCQCPK 41
          N S   RVP C +C  HG  S L+GHK++C +R C C K
Sbjct: 30 NPSYSKRVPNCQKCGQHGRKSRLKGHKRSCPFRECPCAK 68


>Z78060-2|CAB01490.1|  114|Caenorhabditis elegans Hypothetical
           protein C34D1.2 protein.
          Length = 114

 Score = 46.0 bits (104), Expect = 5e-05
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 1/70 (1%)

Query: 7   RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAED 66
           + ++  C RC NH +    + HK  C Y  C C KCGL+ E++RI+  ++    Q   E+
Sbjct: 37  KKKIYYCQRCLNHDVPRPRKNHKCECPYADCTCEKCGLV-EKRRILNIRLQNYNQFNIEN 95

Query: 67  KIALHLASVE 76
           +    L  VE
Sbjct: 96  ENDSKLIIVE 105


>Z73905-5|CAD44103.1|  175|Caenorhabditis elegans Hypothetical
          protein C32C4.5a protein.
          Length = 175

 Score = 45.6 bits (103), Expect = 7e-05
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 13 CARCRNHGLISS-LRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKR-QQAAEDKIAL 70
          C  C NHG+ +   +GHK+ C YR C C  C L  +R+ +   +  LK   +    + A 
Sbjct: 8  CQLCANHGIFNQPKKGHKQKCPYRTCPCSLCALNTKRRALDQIERQLKHTNEPMTGQTAT 67

Query: 71 HLASVETGTPLESLPP 86
           +AS     PL    P
Sbjct: 68 SMASPTPECPLSPTTP 83


>AF535153-1|AAN17799.1|  175|Caenorhabditis elegans putative
          transcription factor MAB-23 protein.
          Length = 175

 Score = 45.6 bits (103), Expect = 7e-05
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 13 CARCRNHGLISS-LRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKR-QQAAEDKIAL 70
          C  C NHG+ +   +GHK+ C YR C C  C L  +R+ +   +  LK   +    + A 
Sbjct: 8  CQLCANHGIFNQPKKGHKQKCPYRTCPCSLCALNTKRRALDQIERQLKHTNEPMTGQTAT 67

Query: 71 HLASVETGTPLESLPP 86
           +AS     PL    P
Sbjct: 68 SMASPTPECPLSPTTP 83


>AC024848-5|AAK68545.1|  254|Caenorhabditis elegans Hypothetical
          protein Y67D8A.3 protein.
          Length = 254

 Score = 39.5 bits (88), Expect = 0.005
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKCGLI 45
          C +C  HG  + L+GH   C Y+ C C  C  +
Sbjct: 31 CRKCEGHGTYAILKGHAGVCPYKDCSCGTCASV 63


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
          protein K08B12.2a protein.
          Length = 449

 Score = 35.9 bits (79), Expect = 0.058
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 13 CARCRNHGLISSLRGHKKACAYRHCQCPKC 42
          C +C  HG    L+GH   C + +C C  C
Sbjct: 61 CRKCEGHGQQVVLKGHASRCPFNNCSCKTC 90


>Z83317-2|CAB05899.1|  470|Caenorhabditis elegans Hypothetical
          protein F13G11.1b protein.
          Length = 470

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 7  RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKC 42
          + R+  C +C  HG    L+ H   C Y  C C  C
Sbjct: 39 KGRILYCRKCEGHGEKVILKNHSPQCPYILCNCKSC 74


>Z83317-1|CAB05898.1|  510|Caenorhabditis elegans Hypothetical
           protein F13G11.1a protein.
          Length = 510

 Score = 34.3 bits (75), Expect = 0.18
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 7   RARVPKCARCRNHGLISSLRGHKKACAYRHCQCPKC 42
           + R+  C +C  HG    L+ H   C Y  C C  C
Sbjct: 79  KGRILYCRKCEGHGEKVILKNHSPQCPYILCNCKSC 114


>Z77663-16|CAB54256.5|  500|Caenorhabditis elegans Hypothetical
           protein F53F4.14 protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 131 VSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKR 177
           ++  S+G   G  ++    D+S  ++E  V    LE +R+ F  KK+
Sbjct: 314 IAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQ 360


>AL021346-4|CAB54259.5|  500|Caenorhabditis elegans Hypothetical
           protein F53F4.14 protein.
          Length = 500

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/47 (27%), Positives = 24/47 (51%)

Query: 131 VSPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKR 177
           ++  S+G   G  ++    D+S  ++E  V    LE +R+ F  KK+
Sbjct: 314 IAAPSIGEDGGNKRINDESDDSEDDSENEVDPEELEAIRQYFEAKKQ 360


>U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical
          protein K08B12.2b protein.
          Length = 86

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 13 CARCRNHGLISSLRGHKKACAYRHC 37
          C +C  HG    L+GH   C + +C
Sbjct: 61 CRKCEGHGQQVVLKGHASRCPFNNC 85


>U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase
           protein 2, isoform c protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 19/70 (27%), Positives = 28/70 (40%)

Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  + +TK+ 
Sbjct: 155 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 214

Query: 376 YWEDKTLFIE 385
            W    +F E
Sbjct: 215 LWSAGCIFAE 224


>U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase
           protein 2, isoform b protein.
          Length = 426

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 19/70 (27%), Positives = 28/70 (40%)

Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  + +TK+ 
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249

Query: 376 YWEDKTLFIE 385
            W    +F E
Sbjct: 250 LWSAGCIFAE 259


>U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase protein
           2, isoform a protein.
          Length = 605

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 19/70 (27%), Positives = 28/70 (40%)

Query: 316 MNNARYVRELDFARFHFYDRTGIYTNIKAVDGHALQGASSIRYRRTIPIFSPYKVETKLV 375
           +N    +R  DF     Y       +   V GH  Q  S+  YR    +FS  + +TK+ 
Sbjct: 190 LNGDCLLRIADFGMARAYASASTVRDDANVGGHMTQYVSTRWYRAPEILFSMVEYDTKVD 249

Query: 376 YWEDKTLFIE 385
            W    +F E
Sbjct: 250 LWSAGCIFAE 259


>Z49887-1|CAA90058.1|  710|Caenorhabditis elegans Hypothetical
           protein F09B9.1 protein.
          Length = 710

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 399 IVLSRQNLLNVDAAALFKGIPGADQKPECPEEIKHWLQSIE----VSSAKLRKK 448
           ++LS    + +D   +FK  P     P+C  + + W++S+E    VS A L+K+
Sbjct: 10  LLLSTSGAVTLDWKDIFKPKPLHGLSPQCLNDTQTWIKSLELFAGVSEACLKKQ 63


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,258,340
Number of Sequences: 27539
Number of extensions: 401431
Number of successful extensions: 976
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 948
Number of HSP's gapped (non-prelim): 26
length of query: 449
length of database: 12,573,161
effective HSP length: 84
effective length of query: 365
effective length of database: 10,259,885
effective search space: 3744858025
effective search space used: 3744858025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)

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