GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000305-TA|BGIBMGA000305-PA|IPR001275|DM DNA-binding,
IPR009060|UBA-like, IPR005173|DMRTA motif
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc f...    35   0.13 
At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related prot...    33   0.39 
At1g79150.1 68414.m09229 expressed protein ; expression supporte...    30   2.7  
At3g15650.1 68416.m01984 phospholipase/carboxylesterase family p...    29   6.3  
At3g17800.1 68416.m02270 expressed protein                             29   8.3  
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden...    29   8.3  

>At1g16710.1 68414.m02003 TAZ zinc finger family protein / zinc finger
            (ZZ type) family protein contains Pfam profiles PF02135:
            TAZ zinc finger, PF00569: Zinc finger, ZZ type
          Length = 1706

 Score = 34.7 bits (76), Expect = 0.13
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 13   CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKIALHL 72
            C  C+    +  L  H +AC    C  P+CG +KE  R +  Q   +R+ A  + +    
Sbjct: 1641 CVLCKKMWYLLQL--HARACKESECDVPRCGDLKEHLRRLQQQSDSRRRAAVMEMMRQRA 1698

Query: 73   ASV 75
            A V
Sbjct: 1699 AEV 1701


>At1g79000.1 68414.m09212 p300/CBP acetyltransferase-related protein 2
            (PCAT2) contains Pfam domains PF02135: TAZ zinc finger
            and PF00569: Zinc finger, ZZ type; identical to cDNA
            p300/CBP acetyltransferase-related protein 2  GI:12597460
          Length = 1691

 Score = 33.1 bits (72), Expect = 0.39
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 13   CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKIALHL 72
            C  C+    +  L  H +AC    C  P+C  +KE  R +  Q   +R+ A  + +    
Sbjct: 1626 CVLCKKMWYLLQL--HARACKESECHVPRCRDLKEHLRRLQQQSDSRRRAAVMEMMRQRA 1683

Query: 73   ASVETGT 79
            A V  G+
Sbjct: 1684 AEVAGGS 1690


>At1g79150.1 68414.m09229 expressed protein ; expression supported
           by MPSS
          Length = 495

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 157 EGAVSTAGLEMLRKLFPGKKRSVLELVLRRCNHDLLRAVEHFN 199
           E  +  A    L+KL   +K+SV   +  RC   LL AV HFN
Sbjct: 270 ESTLLKAYKSYLQKLIIFEKQSVYNQIANRCLCTLLEAVPHFN 312


>At3g15650.1 68416.m01984 phospholipase/carboxylesterase family
           protein low similarity to lysophospholipase I [Mus
           musculus] GI:1864159; contains Pfam profile PF02230:
           Phospholipase/Carboxylesterase family
          Length = 255

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 267 HVIGENAQSASSLLEGLPGSEVRPVC 292
           H +G+N  S+S LLE LP   ++ +C
Sbjct: 40  HGLGDNGSSSSQLLESLPLPNIKWIC 65


>At3g17800.1 68416.m02270 expressed protein
          Length = 421

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 17/52 (32%), Positives = 27/52 (51%)

Query: 132 SPDSVGNSSGVSQLRSGQDESTVEAEGAVSTAGLEMLRKLFPGKKRSVLELV 183
           S ++VG     ++   G+ E  +  EG V ++  E ++  F G KR VLE V
Sbjct: 348 SREAVGIIEKHTEALFGKPEIVITPEGTVDSSKDEQIKISFGGMKRLVLEAV 399


>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
            to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
            CREB-binding protein GB:S39162 from [Homo sapiens]
          Length = 1670

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)

Query: 13   CARCRNHGLISSLRGHKKACAYRHCQCPKCGLIKERQRIMAAQVALKRQQAAEDKIALHL 72
            C  C+   + S  R H + C    C+ PKC  ++        Q   +R+ A  + +    
Sbjct: 1604 CIACKK--MWSLFRLHSRNCRDPQCKVPKCRELRAHFSRKQQQADSRRRAAVMEMVRQRA 1661

Query: 73   ASVETGTP 80
            A     TP
Sbjct: 1662 ADTTASTP 1669


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,884,618
Number of Sequences: 28952
Number of extensions: 383045
Number of successful extensions: 993
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 985
Number of HSP's gapped (non-prelim): 9
length of query: 449
length of database: 12,070,560
effective HSP length: 83
effective length of query: 366
effective length of database: 9,667,544
effective search space: 3538321104
effective search space used: 3538321104
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)