GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000304-TA|BGIBMGA000304-PA|undefined
         (180 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    25   0.36 
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    25   0.36 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.4  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   5.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   5.9  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   5.9  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   7.8  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 65  DLTCAVCRQIAVQAGNRLVECDGCRALYHQV--GNVQPVLQHMDLQLIIQVKLHR 117
           D+ C VC   +      +  CDGC   + +    N Q V +  D    I  K HR
Sbjct: 35  DIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHR 89


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 25.0 bits (52), Expect = 0.36
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 65  DLTCAVCRQIAVQAGNRLVECDGCRALYHQV--GNVQPVLQHMDLQLIIQVKLHR 117
           D+ C VC   +      +  CDGC   + +    N Q V +  D    I  K HR
Sbjct: 35  DIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHR 89


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 63  EEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
           +E+L C VC   A       + C+GC+  + +
Sbjct: 184 QEEL-CLVCGDRASGYHYNALTCEGCKGFFRR 214


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 72  RQIAVQAGNRLVECDGCRALYHQVGNV 98
           + + + +G +  EC  C   + Q GN+
Sbjct: 95  KHLRIHSGEKPYECKLCLLRFSQSGNL 121


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 7/27 (25%), Positives = 14/27 (51%)

Query: 72  RQIAVQAGNRLVECDGCRALYHQVGNV 98
           + + + +G +  EC  C   + Q GN+
Sbjct: 351 KHLRIHSGEKPYECKLCLLRFSQSGNL 377


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
          transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 8/30 (26%), Positives = 14/30 (46%)

Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQVGN 97
          C VC + A         C+GC++ + +  N
Sbjct: 5  CKVCGEPAAGFHFGAFTCEGCKSFFGRTYN 34


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 68  CAVCRQIAVQAGNRLVECDGCRALY 92
           C++C   A      +  C+GC+  +
Sbjct: 86  CSICGDRASGKHYGVYSCEGCKGFF 110


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,593
Number of Sequences: 317
Number of extensions: 1077
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 180
length of database: 114,650
effective HSP length: 53
effective length of query: 127
effective length of database: 97,849
effective search space: 12426823
effective search space used: 12426823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)