GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000304-TA|BGIBMGA000304-PA|undefined
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    37   0.002
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    36   0.003
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    31   0.13 
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    30   0.17 
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    27   1.2  

>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 37.1 bits (82), Expect = 0.002
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 68  CAVCRQIAVQAGNRLVECDGCRALYHQVGNVQPV 101
           C+VC++      NR+V CDGC + YHQ+ +  P+
Sbjct: 193 CSVCQRGHSPLSNRIVFCDGCNSPYHQLCHHPPI 226


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 66  LTCAVCRQIAVQAGNRLVECDGCRALYHQV 95
           + C+VC+++     NR+V CDGC   +HQ+
Sbjct: 233 MKCSVCQRLQSPPKNRIVFCDGCNTPFHQL 262


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 49  DGSVMDGELAFDLLEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQVGNVQPVL 102
           DG+ +D  +  D +   + C  C QI  QA +    CD  R LY Q+  + P++
Sbjct: 291 DGAALDNHIYMDSMGFGMGCC-CLQITFQAKS----CDEARLLYDQLTPITPLM 339


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 63  EEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
           E D  C +C +   +  N +V CD C    HQ
Sbjct: 192 ELDGRCVICNEAECENSNAIVFCDNCNTSVHQ 223


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 61  LLEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQVGNVQPVLQ 103
           LL E   C VC++    A +  V+C  C+  YH    V P+L+
Sbjct: 255 LLNEPSNCKVCKKWC--AFDFSVQCADCKKYYHMDCVVPPLLK 295


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,258
Number of Sequences: 5004
Number of extensions: 20682
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 5
length of query: 180
length of database: 2,362,478
effective HSP length: 69
effective length of query: 111
effective length of database: 2,017,202
effective search space: 223909422
effective search space used: 223909422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)