Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000304-TA|BGIBMGA000304-PA|undefined
(180 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0878 + 6735266-6735340,6735946-6736041,6738610-6738720,673... 31 0.71
04_03_0998 - 21555696-21556080,21556177-21556254,21556333-215564... 29 1.6
09_06_0244 + 21822811-21823246,21823337-21823468,21823949-218240... 29 2.2
01_06_0115 + 26585481-26586401,26586501-26586556,26586747-265868... 28 3.8
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 28 5.0
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650... 28 5.0
09_01_0178 - 2548611-2548670,2549816-2549918,2549993-2550096,255... 27 6.6
10_03_0012 - 7037088-7037282,7037453-7037954,7038079-7038081,704... 27 8.7
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 27 8.7
01_01_0595 - 4430738-4430785,4430904-4432679 27 8.7
>06_01_0878 +
6735266-6735340,6735946-6736041,6738610-6738720,
6738816-6739309,6739422-6739587,6739666-6739789,
6739874-6739986,6740085-6740693,6743095-6743385,
6743845-6743913,6744099-6744188,6744281-6744696,
6744882-6744969
Length = 913
Score = 30.7 bits (66), Expect = 0.71
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 49 DGSVMDGELAFDLLEEDLTCAVCRQIAVQAGNRLVECDG-CRALYHQVGNVQPVL 102
D S+ D A ++ ED+ CA C V N ++ CDG C +HQ P+L
Sbjct: 300 DESMFDS--AGEISSEDIFCAACGSKDVTLKNDIILCDGICDRGFHQYCLNPPLL 352
>04_03_0998 - 21555696-21556080,21556177-21556254,21556333-21556424,
21556524-21556620,21557113-21557141,21557620-21557781,
21557981-21558061,21558156-21558314,21558394-21558510,
21558598-21558666,21558753-21558831,21560884-21561050,
21561109-21561229,21561522-21561649,21562293-21562361,
21562408-21562539,21562619-21562991,21563274-21563398,
21563500-21563655,21563785-21564198,21564634-21564691,
21566522-21566648,21568047-21568305,21569005-21569104,
21569231-21569317,21569454-21569692,21569914-21569999,
21570409-21570532,21571111-21574332
Length = 2444
Score = 29.5 bits (63), Expect = 1.6
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 63 EEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
E D TC +C G L+ CD C A YHQ
Sbjct: 1042 ENDDTCGLCGD-----GGELICCDNCPASYHQ 1068
>09_06_0244 + 21822811-21823246,21823337-21823468,21823949-21824037,
21824135-21824224,21825033-21825603,21826097-21826734,
21826978-21827098,21827223-21827337,21828234-21829723,
21829830-21829901,21830151-21830196,21830413-21830515,
21830591-21830674,21831035-21831475,21831651-21831746,
21831896-21832045,21832131-21832274,21832414-21832527,
21832621-21832803,21832901-21832945,21833058-21833192
Length = 1764
Score = 29.1 bits (62), Expect = 2.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 65 DLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
D +C VC ++ N+L+EC C HQ
Sbjct: 1275 DASCCVCGISNLEPSNQLIECSKCFIKVHQ 1304
>01_06_0115 +
26585481-26586401,26586501-26586556,26586747-26586876,
26587396-26587506,26587606-26587674,26588125-26588198,
26588446-26588581,26588702-26588795,26588901-26589000,
26589100-26589224,26589597-26589634,26589662-26589742,
26589868-26589972,26590102-26590166,26590371-26590572,
26591073-26591159,26591238-26591294,26591369-26591458,
26591572-26591658,26592204-26592278,26592363-26592463,
26592565-26592655
Length = 964
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQ 94
CAVCR + N++V C+ C+ HQ
Sbjct: 545 CAVCRWVEDWDYNKIVICNRCQIAVHQ 571
>01_06_0293 - 28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 27.9 bits (59), Expect = 5.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQVGNVQPVLQH 104
C C Q V G L++C CR + + PV+ H
Sbjct: 1319 CRRCAQRPVAGGLPLLDCSACRCATSRSPMLSPVVTH 1355
>01_01_0832 -
6500139-6500333,6500610-6500875,6501494-6501815,
6501915-6502156,6502229-6502457,6503020-6503184,
6503279-6503605,6504150-6504191,6504333-6504400,
6504748-6504934,6506249-6506311,6506748-6506790,
6506919-6507019,6507110-6507184,6507359-6507445,
6507593-6507682,6507906-6507992,6508585-6508783,
6509113-6509177,6509502-6509606,6509726-6509871,
6510100-6510224,6510335-6510437,6510482-6510596,
6510734-6510869,6511298-6511387,6511484-6511578,
6511698-6511763,6511868-6511936,6512034-6512147,
6512241-6512448,6512545-6512600,6512818-6513552
Length = 1671
Score = 27.9 bits (59), Expect = 5.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQ 94
CAVCR + N+++ C+ C+ HQ
Sbjct: 577 CAVCRWVEDWDYNKIIICNRCQIAVHQ 603
>09_01_0178 -
2548611-2548670,2549816-2549918,2549993-2550096,
2550893-2550988,2551418-2551482,2551558-2551591,
2552469-2552540,2552567-2552644,2553416-2553477,
2554267-2554530,2555057-2555246,2555432-2555500,
2555613-2555669,2555746-2555846,2556029-2556146,
2556225-2556272,2556362-2556487,2556960-2557118,
2558119-2558216,2558324-2558416,2559741-2559937,
2560231-2560354,2561121-2561334,2561773-2561830,
2561955-2562433
Length = 1022
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 50 GSVMDGELAFDLLEEDLT-CAVCRQIAVQAGNRLVECDGCRALYHQ--VGNVQPV 101
G G A + +DL C+VC N ++CD CR + H G ++P+
Sbjct: 490 GDTFRGYRAVHVNWKDLDYCSVCDMDEEYEDNLFLQCDKCRMMVHARCYGELEPL 544
>10_03_0012 -
7037088-7037282,7037453-7037954,7038079-7038081,
7040633-7041213
Length = 426
Score = 27.1 bits (57), Expect = 8.7
Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 68 CAVC----RQIAVQAGNRLVECDGCRALYHQVGNVQPVLQHMDLQLIIQVKLHRAPSHHQ 123
C +C R V + C C + N P+ + ++ ++++K++ Q
Sbjct: 344 CVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTNRCPICRQ-PVERLLEIKVNNKGEEQQ 402
Query: 124 ECLVPQPP 131
+ +PQPP
Sbjct: 403 QQQIPQPP 410
>04_04_1694 - 35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 27.1 bits (57), Expect = 8.7
Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 63 EEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
E D TC C G L+ CD C + YHQ
Sbjct: 1023 ENDDTCGFCGD-----GGELLCCDNCPSTYHQ 1049
>01_01_0595 - 4430738-4430785,4430904-4432679
Length = 607
Score = 27.1 bits (57), Expect = 8.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 63 EEDLTCAVCRQIAVQAGNRLVECDGCRALYH 93
++ + CAVC + +V CDGC + H
Sbjct: 403 DDGVHCAVCGSTDGDPSDPIVFCDGCDLMVH 433
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,267,403
Number of Sequences: 37544
Number of extensions: 148377
Number of successful extensions: 282
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 277
Number of HSP's gapped (non-prelim): 10
length of query: 180
length of database: 14,793,348
effective HSP length: 78
effective length of query: 102
effective length of database: 11,864,916
effective search space: 1210221432
effective search space used: 1210221432
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -