GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000304-TA|BGIBMGA000304-PA|undefined
         (180 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.078
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)                    33   0.10 
SB_16726| Best HMM Match : PHD (HMM E-Value=7.8e-13)                   32   0.24 
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.72 
SB_20950| Best HMM Match : PHD (HMM E-Value=0.2)                       31   0.72 
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)                 29   2.9  
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  
SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.9  

>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 33.9 bits (74), Expect = 0.078
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 52  VMDGELAFDLLEEDLTCAVCRQIAVQAGNRLVECDGCRALYH 93
           ++D  + +DL  E++ C VCR+ + ++   L+ CD C   YH
Sbjct: 883 ILDSAIVWDLSAENVKCKVCRRKS-RSDETLLLCDECNMGYH 923



 Score = 33.1 bits (72), Expect = 0.14
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 46   ENDDGSVMDGELAFDLLEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
            + D+ S  D + + D  EED     C +   Q G+ L+ CDGC  +YH+
Sbjct: 964  DEDESSDDDSDDSSDESEEDGHEDYCHECE-QGGDELICCDGCPRVYHR 1011


>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
          Length = 344

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 4/47 (8%)

Query: 52  VMDGE-LAFDLLEEDL--TCAVCRQIAVQ-AGNRLVECDGCRALYHQ 94
           V+DGE +  + L  DL  +C+VC     +  GN+LVEC  C + YHQ
Sbjct: 147 VLDGEAIPVEDLAIDLGVSCSVCDHSENKMTGNKLVECHECHSHYHQ 193


>SB_16726| Best HMM Match : PHD (HMM E-Value=7.8e-13)
          Length = 112

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 63 EEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
          +E + C VC+    + GN +V CD C    HQ
Sbjct: 40 DESVCCDVCQSPESEEGNEMVFCDSCDICVHQ 71


>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 770

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 62  LEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
           ++ED  C +C     Q  N ++ CD C    HQ
Sbjct: 254 IDEDAVCCICNDGECQNSNVILFCDMCNLAVHQ 286


>SB_20950| Best HMM Match : PHD (HMM E-Value=0.2)
          Length = 298

 Score = 30.7 bits (66), Expect = 0.72
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 68  CAVCRQIAVQAGNRLVECDGCRALYHQ 94
           C +C       G+ +VECDGC    H+
Sbjct: 113 CGICMDDLSDEGDEIVECDGCGITVHE 139


>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
          Length = 1080

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 68  CAVCRQIAVQAGNRLVECDGCRALYH 93
           C VC + AV++  R ++CD C   YH
Sbjct: 100 CGVCSK-AVRSNQRAIQCDFCDIWYH 124


>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1789

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 16  RSKHKIDKNAVTKTXXXXXXXXXXXXXXERENDDGSVMDGELAF-DLLEEDLTCAVCRQI 74
           +S+ K+ +    K                R  DD  VM  E+       ED+    CR  
Sbjct: 396 KSRKKVVRKPSIKIKDTTIKKDKHSKRRHRTCDDDEVMGVEVEMTSSSSEDIHSDYCR-- 453

Query: 75  AVQAGNRLVECDGCRALYHQVGNVQPVLQ 103
             + G +L+ CD C   YH    + P+++
Sbjct: 454 VCKDGGQLLCCDKCPMAYHLKCLIPPMMR 482


>SB_8500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3408

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 68  CAVCRQIAVQAGNRLVECDGCRAL 91
           C  CR   V +   +VEC G RAL
Sbjct: 806 CGACRSARVPSSRSVVECGGLRAL 829


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,923,219
Number of Sequences: 59808
Number of extensions: 166330
Number of successful extensions: 363
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 10
length of query: 180
length of database: 16,821,457
effective HSP length: 78
effective length of query: 102
effective length of database: 12,156,433
effective search space: 1239956166
effective search space used: 1239956166
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)