Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000304-TA|BGIBMGA000304-PA|undefined
(180 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022982-8|AAB69934.1| 234|Caenorhabditis elegans Hypothetical ... 32 0.21
AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical ... 29 2.5
AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical ... 29 2.5
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF067942-5|AAG45580.2| 345|Caenorhabditis elegans Hypothetical ... 27 5.9
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 27 5.9
Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical pr... 27 7.7
AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear recep... 27 7.7
AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear recep... 27 7.7
AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear recep... 27 7.7
>AF022982-8|AAB69934.1| 234|Caenorhabditis elegans Hypothetical
protein T23B12.1 protein.
Length = 234
Score = 32.3 bits (70), Expect = 0.21
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQVGNVQPV 101
CAVC +++ AGN+++ C CR YH ++ V
Sbjct: 150 CAVCHGVSL-AGNQVLACRRCRDCYHMACSIPTV 182
>AC024809-9|AAO12399.1| 700|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2b protein.
Length = 700
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 64 EDLTCAVCRQIAVQAGNRLVECDGCRALYHQV 95
ED C VCR + +V CD C H V
Sbjct: 236 EDAECDVCRISDCDVADEMVFCDMCNTCVHMV 267
>AC024809-8|AAF59546.2| 741|Caenorhabditis elegans Hypothetical
protein Y53G8AR.2a protein.
Length = 741
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 64 EDLTCAVCRQIAVQAGNRLVECDGCRALYHQV 95
ED C VCR + +V CD C H V
Sbjct: 277 EDAECDVCRISDCDVADEMVFCDMCNTCVHMV 308
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
protein T28C6.9 protein.
Length = 1861
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 83 VECDGCRALYHQVGNVQPVLQHMDLQLIIQVKLHRA 118
VE DG R +H+ + ++H+ +L Q ++HRA
Sbjct: 201 VELDGVRQGFHETRELADEVKHLRSELQRQQEIHRA 236
>AF067942-5|AAG45580.2| 345|Caenorhabditis elegans Hypothetical
protein ZK6.5 protein.
Length = 345
Score = 27.5 bits (58), Expect = 5.9
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 61 LLEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ-VGNVQPVLQ 103
+L + TCAVC + + + C+ C+ + + + PV Q
Sbjct: 1 MLASNQTCAVCERFTTEFNYGVPSCNACKIFFRRLITRTAPVKQ 44
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 92 YHQVGNVQPVLQHMDLQLIIQVKLHRAPSHHQE 124
Y QV VQ V QH+ Q +Q + H HHQ+
Sbjct: 1035 YQQVQQVQQV-QHVQQQQNLQNQHHHQQQHHQQ 1066
>Z83128-3|CAB05637.1| 415|Caenorhabditis elegans Hypothetical
protein W01D2.2b protein.
Length = 415
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 62 LEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
+ + L CAVC +A+ + C+GC+ + +
Sbjct: 24 IRKSLQCAVCGDVALGKHYGVNACNGCKGFFRR 56
>Z83128-2|CAB05636.1| 412|Caenorhabditis elegans Hypothetical
protein W01D2.2a protein.
Length = 412
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 62 LEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
+ + L CAVC +A+ + C+GC+ + +
Sbjct: 24 IRKSLQCAVCGDVALGKHYGVNACNGCKGFFRR 56
>AY305830-1|AAR11975.1| 418|Caenorhabditis elegans nuclear
receptor NHR-61 protein.
Length = 418
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 62 LEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
+ + L CAVC +A+ + C+GC+ + +
Sbjct: 30 IRKSLQCAVCGDVALGKHYGVNACNGCKGFFRR 62
>AF273811-1|AAG15160.1| 415|Caenorhabditis elegans nuclear
receptor NHR-61 protein.
Length = 415
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 62 LEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
+ + L CAVC +A+ + C+GC+ + +
Sbjct: 27 IRKSLQCAVCGDVALGKHYGVNACNGCKGFFRR 59
>AF273809-1|AAG15158.1| 418|Caenorhabditis elegans nuclear
receptor NHR-61 protein.
Length = 418
Score = 27.1 bits (57), Expect = 7.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 62 LEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
+ + L CAVC +A+ + C+GC+ + +
Sbjct: 27 IRKSLQCAVCGDVALGKHYGVNACNGCKGFFRR 59
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,670,269
Number of Sequences: 27539
Number of extensions: 128760
Number of successful extensions: 393
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 385
Number of HSP's gapped (non-prelim): 11
length of query: 180
length of database: 12,573,161
effective HSP length: 77
effective length of query: 103
effective length of database: 10,452,658
effective search space: 1076623774
effective search space used: 1076623774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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