GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000304-TA|BGIBMGA000304-PA|undefined
         (180 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   5.3  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.2  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 5.3
 Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)

Query: 63  EEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
           +E+L C VC   A       + C+GC+  + +
Sbjct: 183 QEEL-CLVCGDRASGYHYNALTCEGCKGFFRR 213


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 68  CAVCRQIAVQAGNRLVECDGCRALY 92
           C++C   A      +  C+GC+  +
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFF 134


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 9.2
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 68  CAVCRQIAVQAGNRLVECDGCRALY 92
           C++C   A      +  C+GC+  +
Sbjct: 110 CSICGDRASGKHYGVYSCEGCKGFF 134


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.134    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,985
Number of Sequences: 429
Number of extensions: 1621
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 180
length of database: 140,377
effective HSP length: 54
effective length of query: 126
effective length of database: 117,211
effective search space: 14768586
effective search space used: 14768586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)