Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000304-TA|BGIBMGA000304-PA|undefined
(180 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32950.1 68415.m04039 COP1 regulatory protein photomorphogene... 31 0.34
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 31 0.59
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 31 0.59
At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger) fa... 30 0.78
At5g58610.1 68418.m07345 PHD finger transcription factor, putative 30 1.0
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 30 1.0
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai... 29 1.8
At3g46800.1 68416.m05080 DC1 domain-containing protein contains ... 29 1.8
At4g38190.1 68417.m05391 cellulose synthase family protein simil... 29 2.4
At5g53430.1 68418.m06640 PHD finger family protein / SET domain-... 28 4.2
At4g27910.1 68417.m04006 PHD finger protein-related / SET domain... 28 4.2
At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger) fa... 28 4.2
At5g36740.1 68418.m04402 PHD finger family protein 27 5.5
At5g36670.1 68418.m04388 PHD finger family protein 27 5.5
At4g14760.1 68417.m02271 M protein repeat-containing protein con... 27 5.5
At1g05055.1 68414.m00506 basic transcription factor 2, 44kD subu... 27 5.5
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 27 7.3
At2g18190.1 68415.m02116 AAA-type ATPase family protein contains... 27 9.6
>At2g32950.1 68415.m04039 COP1 regulatory protein
photomorphogenesis repressor; identical to COP1
regulatory protein/FUSCA protein FUS1 GI:402685
SP:P43254
Length = 675
Score = 31.5 bits (68), Expect = 0.34
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 46 ENDDGSVMDGELAFDLLEEDLTCAVCRQIAVQA 78
ENDDG E+ L++DL C +C QI A
Sbjct: 30 ENDDGGSGGSEIGAPDLDKDLLCPICMQIIKDA 62
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 63 EEDLTCAVCRQIAVQAGNRLVECDGCRALYH 93
E+ + CAVC+ N +V CDGC + H
Sbjct: 148 EDGIMCAVCQSTDGDPLNPIVFCDGCDLMVH 178
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 30.7 bits (66), Expect = 0.59
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 63 EEDLTCAVCRQIAVQAGNRLVECDGCRALYH 93
E+ + CAVC+ N +V CDGC + H
Sbjct: 148 EDGIMCAVCQSTDGDPLNPIVFCDGCDLMVH 178
>At5g37200.1 68418.m04466 zinc finger (C3HC4-type RING finger)
family protein low similarity to ring-H2 finger protein
RHY1a from Arabidopsis thaliana [gi:3790593], ring
finger-H2 protein from Xenopus laevis [gi:13752371];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 217
Score = 30.3 bits (65), Expect = 0.78
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 60 DLLEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
DL EED TC++C + ++ ++ C L+HQ
Sbjct: 151 DLEEEDETCSICIEKFSESHEDIIRVPDCLHLFHQ 185
>At5g58610.1 68418.m07345 PHD finger transcription factor, putative
Length = 1065
Score = 29.9 bits (64), Expect = 1.0
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 5/31 (16%)
Query: 63 EEDLTCAVCRQIAVQAGNRLVECDGCRALYH 93
E D+ C+VC G +L+ CDGC + +H
Sbjct: 692 ENDVFCSVCHY-----GGKLILCDGCPSAFH 717
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 29.9 bits (64), Expect = 1.0
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
Query: 54 DGELAFDLLEEDLTCAVCRQIAVQAGNRLVECDG-CRALYHQVGNVQPVLQHMDL 107
DGE++ ED+ CA C + N ++ CDG C +HQ ++P L+ D+
Sbjct: 258 DGEIS----SEDIFCAKCGSKDLSVDNDIILCDGFCDRGFHQY-CLEPPLRKEDI 307
>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
Pfam domains PF00628: PHD-finger and PF00855: PWWP
domain; identical to cDNA trithorax 3 (ATX3) partial cds
GI:15217142
Length = 799
Score = 29.1 bits (62), Expect = 1.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQ 94
CAVCR + N+++ C+ C+ HQ
Sbjct: 493 CAVCRWVEDWEENKMIICNRCQVAVHQ 519
>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 682
Score = 29.1 bits (62), Expect = 1.8
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 61 LLEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQ--VGNVQPVLQHMDLQLIIQVKLHRA 118
LL+E C +C +L EC C L+H VG + V Q + ++ + A
Sbjct: 145 LLKEGRNCNMCNTNIKINEKQLCECRLCNILFHLDCVGLIPNVYQTSHPKHPLKFLQYGA 204
Query: 119 PSH-HQECLV 127
P + H++CL+
Sbjct: 205 PEYAHEKCLL 214
>At4g38190.1 68417.m05391 cellulose synthase family protein similar
to cellulose synthase catalytic subunit gi:2827143 from
[Arabidopsis thaliana], cellulose synthase-5
(gi:9622882) from Zea mays
Length = 1111
Score = 28.7 bits (61), Expect = 2.4
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 49 DGSVMDGELAFDLLEEDLTCAVCRQIAVQAGNRLVECDGCRALYHQVGNV 98
DG+VM E D++ + +CR + A C GC+ Y ++G++
Sbjct: 121 DGNVMKDERGKDVMPCECRFKICRDCFMDAQKETGLCPGCKEQY-KIGDL 169
>At5g53430.1 68418.m06640 PHD finger family protein / SET
domain-containing protein (TX5) contains Pfam domain,
PF00628: PHD-finger and PF00856: SET domain; identical
to cDNA trithorax 5 (TX5) partial cds GI:16118406
Length = 1043
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQ 94
CAVCR + N+++ C+ C+ HQ
Sbjct: 610 CAVCRWVEDWDYNKIIICNRCQIAVHQ 636
>At4g27910.1 68417.m04006 PHD finger protein-related / SET
domain-containing protein (TX4) nearly identical over
285 amino acids to trithorax 4 [Arabidopsis thaliana]
GI:16118405; contains Pfam profiles PF00856: SET domain,
PF00855: PWWP domain; identical to cDNA trithorax 4
(TX4) partial cds GI:16118404
Length = 1027
Score = 27.9 bits (59), Expect = 4.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 68 CAVCRQIAVQAGNRLVECDGCRALYHQ 94
CAVCR + N+++ C+ C+ HQ
Sbjct: 595 CAVCRWVEDWDYNKIIICNRCQIAVHQ 621
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 68 CAVCRQIAVQAGNRL-VECDGCRALYH 93
C +C++I N+ V CDGC+ H
Sbjct: 401 CGICKKIRNHLDNKSWVRCDGCKVRIH 427
>At4g08590.1 68417.m01412 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profiles PF00097: Zinc
finger C3HC4 type (RING finger), PF02182: YDG/SRA
domain
Length = 465
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 44 ERENDDG---SVMDGELAFDLLEEDLTCAVCRQI 74
E DG S+ DG AF + EDL C++C Q+
Sbjct: 82 ENNKSDGEIASLNDGVDAFTAICEDLNCSLCNQL 115
>At5g36740.1 68418.m04402 PHD finger family protein
Length = 1179
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 65 DLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
D TC +C G L+ CDGC + +HQ
Sbjct: 650 DDTCGICGD-----GGDLICCDGCPSTFHQ 674
>At5g36670.1 68418.m04388 PHD finger family protein
Length = 1193
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 65 DLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
D TC +C G L+ CDGC + +HQ
Sbjct: 650 DDTCGICGD-----GGDLICCDGCPSTFHQ 674
>At4g14760.1 68417.m02271 M protein repeat-containing protein contains
Pfam profile: PF02370 M protein repeat
Length = 1676
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 91 LYHQVGNVQPVLQHMDLQLIIQVKLHRAPSHHQE 124
L HQV NV +L+H +++++ + +A ++ E
Sbjct: 1113 LEHQVSNVDEILEHREMEILEAEHMLKATNNENE 1146
>At1g05055.1 68414.m00506 basic transcription factor 2, 44kD
subunit-related contains weak similarity to
Swiss-Prot:Q13888 TFIIH basal transcription factor
complex p44 subunit (Basic transcription factor 2 44 kDa
subunit, BTF2-p44, General transcription factor IIH
polypeptide 2) [Homo sapiens]
Length = 421
Score = 27.5 bits (58), Expect = 5.5
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 67 TCAVCRQIAVQAGNRLVECDGCRALYH 93
+C C+Q + AGN+ V C CR H
Sbjct: 361 SCFGCQQSLIGAGNKPVPCVTCRKCKH 387
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 27.1 bits (57), Expect = 7.3
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 65 DLTCAVCRQIAVQAGNRLVECDGCRALYHQ 94
D C +C G L+ CDGC + YHQ
Sbjct: 87 DDACGICGD-----GGDLICCDGCPSTYHQ 111
>At2g18190.1 68415.m02116 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 494
Score = 26.6 bits (56), Expect = 9.6
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 48 DDGSVMDGELAFDLLEEDLTCAVCRQIAVQAGNRLVECDGCRAL 91
D V ELA +L++ED T V R + NR VE + L
Sbjct: 412 DSTEVTPAELAEELMQEDDTDVVLRGVVSFVENRKVEISKTKEL 455
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.134 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,419,504
Number of Sequences: 28952
Number of extensions: 117049
Number of successful extensions: 256
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 242
Number of HSP's gapped (non-prelim): 20
length of query: 180
length of database: 12,070,560
effective HSP length: 77
effective length of query: 103
effective length of database: 9,841,256
effective search space: 1013649368
effective search space used: 1013649368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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