GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000303-TA|BGIBMGA000303-PA|IPR005225|Small GTP-binding
protein domain, IPR013753|Ras, IPR003577|Ras small GTPase, Ras type,
IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small GTPase, Rho
type, IPR001806|Ras GTPase
         (209 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    21   5.4  
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    21   5.4  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   7.1  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    21   9.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    21   9.4  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   9.4  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 126 ESPEIREVSASEGQAQAQAWGVSFMETSAKTNHN 159
           E   I+E++  E QAQAQ    +    +A+ + N
Sbjct: 281 EIQAIKELNEQEKQAQAQKAAAAAAAVAAQVDPN 314


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 126 ESPEIREVSASEGQAQAQAWGVSFMETSAKTNHN 159
           E   I+E++  E QAQAQ    +    +A+ + N
Sbjct: 63  EIQAIKELNEQEKQAQAQKAAAAAAAVAAQVDPN 96


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 88  VSSRQSLEELKPIWQTIKEIKGVELPNIPVMLA 120
           + + Q  +E   I   IK+I+G EL  +  ++A
Sbjct: 99  IDTLQRSDEEAQIQLWIKQIRGAELGGLGTLIA 131


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 85  VYSVSSRQSLEELKPIWQTIKEIKGVELPN 114
           V+++ +R++  ++ P   TIK    +  PN
Sbjct: 333 VFNIRARRTGRKVSPRVNTIKHTSCIPTPN 362


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 85  VYSVSSRQSLEELKPIWQTIKEIKGVELPN 114
           V+++ +R++  ++ P   TIK    +  PN
Sbjct: 333 VFNIRARRTGRKVSPRVNTIKHTSCIPTPN 362


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 18  VGKSSLVLRFVKGTFR 33
           VGK   + RF++G +R
Sbjct: 111 VGKDHRIKRFLRGVYR 126


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.128    0.358 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,100
Number of Sequences: 317
Number of extensions: 1493
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 209
length of database: 114,650
effective HSP length: 54
effective length of query: 155
effective length of database: 97,532
effective search space: 15117460
effective search space used: 15117460
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)