Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000303-TA|BGIBMGA000303-PA|IPR005225|Small GTP-binding
protein domain, IPR013753|Ras, IPR003577|Ras small GTPase, Ras type,
IPR003579|Ras small GTPase, Rab type, IPR003578|Ras small GTPase, Rho
type, IPR001806|Ras GTPase
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 121 9e-29
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 106 2e-24
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 93 3e-20
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 91 8e-20
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 87 2e-18
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 83 2e-17
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 82 5e-17
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 82 7e-17
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 80 3e-16
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 79 4e-16
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 76 3e-15
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 76 4e-15
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 72 5e-14
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 71 9e-14
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 69 4e-13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 66 4e-12
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 61 1e-10
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 2e-08
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 37 0.002
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.013
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 29 0.38
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 29 0.38
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 29 0.50
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 28 1.2
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.6
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 8.1
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 121 bits (291), Expect = 9e-29
Identities = 63/171 (36%), Positives = 99/171 (57%), Gaps = 3/171 (1%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSH 66
+Y++VV G GGVGKS+L ++ ++ F + Y PTIED+YR+ + L + DT G
Sbjct: 8 EYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQE 67
Query: 67 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCDE 126
++ AM+ + G F+LVY+++SR S +E+ +Q I +K + PV+L NKCD
Sbjct: 68 EYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVK--DKDTFPVVLVANKCDL 125
Query: 127 SPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLFQELLNMEKNRNVS 177
E R VS +EG+ A++ ++ETSAK NV + F L+ + N S
Sbjct: 126 EAE-RVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKS 175
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 106 bits (255), Expect = 2e-24
Identities = 60/170 (35%), Positives = 96/170 (56%), Gaps = 4/170 (2%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 68
R+ V G+ VGKSSL +++V+ F ESY PTIE+T+ + I +I DT G ++
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTAGQDEY 67
Query: 69 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCDESP 128
+ H ++LVYS++S+ S E +K + I G E +P+++ GNK D
Sbjct: 68 SILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEW--VPIVVVGNKSDLHM 125
Query: 129 EIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLFQELLN-MEKNRNVS 177
+ R V+A EG+A A W ++ E SA+ N NV + F+ +++ +EK N S
Sbjct: 126 Q-RAVTAEEGKALANEWKCAWTEASARHNENVARAFELIISEIEKQANPS 174
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 93.1 bits (221), Expect = 3e-20
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 7/182 (3%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYR-QVISSNKTICTL 57
M +S DY ++++ G GVGKS L+LRF + +F S+I TI ++ + I + L
Sbjct: 1 MSTKSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKL 60
Query: 58 QITDTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPV 117
QI DT G +F + +L+Y V+ ++S + ++ + +++ N+
Sbjct: 61 QIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHAS---ENVYK 117
Query: 118 MLAGNKCDESPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLFQELLNMEKNRNVS 177
+L GNKCD + R+VS +GQA A GV F+E SAKTN NV + F L K + +
Sbjct: 118 ILIGNKCDCEDQ-RQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKID 176
Query: 178 LQ 179
+
Sbjct: 177 AE 178
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 91.5 bits (217), Expect = 8e-20
Identities = 61/159 (38%), Positives = 86/159 (54%), Gaps = 7/159 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTF---RESYIPTIEDTYRQVISSNKTICTLQITDTTGS 65
++V+ G VGKSSLVLRFVK F RES I T I N ++ L+I DT G
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSV-KLEIWDTAGQ 74
Query: 66 HQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 125
++ ++ + + I+VY ++ SLE+ K W IKE++ I + LAGNK D
Sbjct: 75 ERYKSLAPMYYRNANCAIVVYDITQAASLEKAKS-W--IKELQRQAPEGIVIALAGNKLD 131
Query: 126 ESPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLF 164
+ E R V ++ +A A + F ETSAKT NV +LF
Sbjct: 132 LAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELF 170
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 87.0 bits (206), Expect = 2e-18
Identities = 59/175 (33%), Positives = 87/175 (49%), Gaps = 7/175 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISSNKTICTLQI 59
PE +++++ G GVGKS L+LRF T+ ESYI TI + R KT+ LQI
Sbjct: 3 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTV-KLQI 61
Query: 60 TDTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVML 119
DT G +F + H I+VY V+ + S +K Q ++EI + + +L
Sbjct: 62 WDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVK---QWLQEIDRYAVEGVNRLL 118
Query: 120 AGNKCDESPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLFQELLNMEKNR 174
GNK D + + V S + A + + F+ETSAK + NV Q F + K R
Sbjct: 119 VGNKSD-MVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKER 172
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 83.4 bits (197), Expect = 2e-17
Identities = 53/169 (31%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F KGTF E Y+PT+ + Y + + L + DT G +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHVELALWDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD--E 126
++ LS H ++ ++V S SL+ ++ W I E+ ++P++L K D
Sbjct: 68 DRLRPLSYPDSHVILICFAVDSPDSLDNVQEKW--ISEVLHF-CSSLPILLVACKADLRN 124
Query: 127 SPEIRE---------VSASEGQAQAQAWGV-SFMETSAKTNHNVTQLFQ 165
P+I E V+ EGQA AQ G ++E SAKTN V ++F+
Sbjct: 125 DPKIIEELSKTNQHPVTTEEGQAVAQKIGAYKYLECSAKTNEGVREVFE 173
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 82.2 bits (194), Expect = 5e-17
Identities = 55/163 (33%), Positives = 84/163 (51%), Gaps = 7/163 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI--EDTYRQVISSNKTICTLQITDTTGS 65
++ V+ G GVGKS+L++RF + F TI E R ++ NK I QI DT G
Sbjct: 11 FKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKI-KAQIWDTAGQ 69
Query: 66 HQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 125
++ A+ ++VY ++ + S + + + +KE++ NI +ML GNK D
Sbjct: 70 ERYRAITSAYYRGAVGALIVYDITKQSSFDN---VGRWLKELREHADSNIVIMLVGNKTD 126
Query: 126 ESPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLFQELL 168
+R VS E QA A +SF+ETSA NV + FQ +L
Sbjct: 127 LL-HLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVL 168
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 81.8 bits (193), Expect = 7e-17
Identities = 52/169 (30%), Positives = 87/169 (51%), Gaps = 15/169 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 68
++V+ G G GK+ L++ F KGTF E Y+PT+ + Y + + L + DT G +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 69 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD--- 125
++ LS H ++ +SV + +SL+ ++ W I E+ N+P++L G K D
Sbjct: 68 DRLRPLSYPDSHVVLICFSVDAPESLDNVQEKW--ISEVLHF-CSNLPILLVGCKVDLRN 124
Query: 126 ESPEIREVSAS--------EGQAQAQAWGV-SFMETSAKTNHNVTQLFQ 165
+ I E+S + EGQ AQ G ++E SAK N V ++F+
Sbjct: 125 DPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFE 173
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 79.8 bits (188), Expect = 3e-16
Identities = 49/165 (29%), Positives = 90/165 (54%), Gaps = 7/165 (4%)
Query: 8 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISSNKTICTLQITDTTGS 65
+++V G VGK+SL+ RF+ F +Y TI + + + ++T+ LQ+ DT G
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTV-RLQLWDTAGQ 70
Query: 66 HQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD 125
+F ++ I I+VY +++ S + W I++++ ++ ++L GNK D
Sbjct: 71 ERFRSLIPSYIRDSSVAIIVYDITNHNSFVNTEK-W--IEDVRAERGDDVIIVLVGNKTD 127
Query: 126 ESPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLFQELLNM 170
+ + R+V+ EG+ +A+ + METSAK HNV LF+++ M
Sbjct: 128 LADK-RQVTQEEGEKKAKELKIMHMETSAKAGHNVKLLFRKIAQM 171
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 79.4 bits (187), Expect = 4e-16
Identities = 51/166 (30%), Positives = 81/166 (48%), Gaps = 11/166 (6%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 68
++V+ G G GK+SL+ F KG F + Y PTI + Y I + L + DT G ++
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 69 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD--- 125
++ LS S H ++ ++V SR SLE + W + E+ P + ++L KCD
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRDSLENVITKW--LPEVSS-NCPGVKLVLVALKCDLRG 131
Query: 126 ----ESPEIREVSASEGQAQAQAW-GVSFMETSAKTNHNVTQLFQE 166
+ + + EG A A+ V ++E SAK N V + F E
Sbjct: 132 ADEEQVDHSKIIDYEEGLAAAKKINAVRYLECSAKLNRGVNEAFTE 177
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 76.2 bits (179), Expect = 3e-15
Identities = 51/167 (30%), Positives = 86/167 (51%), Gaps = 7/167 (4%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISSNKTICTLQITDTTGSH 66
+V++ G GVGK+S++ ++V F + Y TI + ++V+ +K + TLQ+ DT G
Sbjct: 10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVV-TLQLWDTAGQE 68
Query: 67 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIW--QTIKEIKGVELPNIPVMLAGNKC 124
+F ++ +LVY V++ +S E L W + + + P +L GNK
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETLDS-WRDEFLIQASPSNPETFPFILLGNKV 127
Query: 125 DESPEIREVSASEGQAQAQAWG-VSFMETSAKTNHNVTQLFQELLNM 170
D + R VS S+ A QA G + + ETSAK NV + F+ + +
Sbjct: 128 DVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKL 174
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 75.8 bits (178), Expect = 4e-15
Identities = 53/182 (29%), Positives = 91/182 (50%), Gaps = 16/182 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVIS--SNKTICTLQITDTTGSH 66
++VV G GG GK+ L++ F GTF E Y+PT+ + Y I+ N + L + DT G
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 67 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD- 125
++ ++ LS + +L +S+ SL + W E++ P P++L G K D
Sbjct: 76 EYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKW--YPEVQHF-CPRTPIVLVGLKADL 132
Query: 126 -ESPEIREVSASEG-------QAQAQAWGVS--FMETSAKTNHNVTQLFQELLNMEKNRN 175
+ EV ++G QAQ+ A ++ ++E SAK N V ++FQ + + ++
Sbjct: 133 RKDRNATEVLRTQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQLAVGLTIKKS 192
Query: 176 VS 177
S
Sbjct: 193 FS 194
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 72.1 bits (169), Expect = 5e-14
Identities = 50/169 (29%), Positives = 83/169 (49%), Gaps = 15/169 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 68
++VV G G GK+SL+ F G F Y+PT+ + Y + L + DT G ++
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENYVSDCRVDGKSVQLALWDTAGQEEY 69
Query: 69 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD--E 126
++ +S +K H ++ +++ S SLE + W I+EI + PN+P +L G K D
Sbjct: 70 ERLRPMSYAKAHIILVGFAIDSPDSLENVSTKW--IEEINTL-CPNVPFILVGMKADLRS 126
Query: 127 SP----EIRE-----VSASEGQAQAQAWGV-SFMETSAKTNHNVTQLFQ 165
P E+R V + + + AQ G +ME S+ T V +F+
Sbjct: 127 DPVAIEEMRRRNQNFVKSQQAELVAQRIGARKYMECSSLTGDGVDDVFE 175
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 71.3 bits (167), Expect = 9e-14
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 68
+ VV G G VGK+ L++ + F Y+PT+ D Y + TL + DT G +
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAVTVMIGDEPYTLGLFDTAGQEDY 64
Query: 69 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCD--E 126
++ LS + F++ +SV+S S E +K W E+ P +P ++ G + D +
Sbjct: 65 DRLRPLSYPQTDVFLVCFSVTSPASFENVKEKW--FPEVHH-HCPGVPCLIVGTQIDLRD 121
Query: 127 SPEIRE---------VSASEGQAQAQAWG-VSFMETSAKTNHNVTQLFQELL 168
P +++ ++ +G+ A+ G V ++E SA T + +F E +
Sbjct: 122 DPSVQQKLARQHQHPLTHEQGERLARELGAVKYVECSALTQKGLKNVFDEAI 173
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 69.3 bits (162), Expect = 4e-13
Identities = 56/177 (31%), Positives = 90/177 (50%), Gaps = 12/177 (6%)
Query: 1 MPEQSNDY--RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVIS----SNKT 53
M ++S DY ++V+ G G GKS L+ RFVK + + T+ D ++IS + +
Sbjct: 1 MDKESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQK 60
Query: 54 ICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELP 113
LQI DT G +F ++ R +LVY V+++ S EEL W + +I+ +
Sbjct: 61 RIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSS-W--LSDIRAMAPS 117
Query: 114 NIPVMLAGNKCDESPEIREVSASEGQAQAQAWGVSFM-ETSAKTNHNVTQLFQELLN 169
I V+LAG+K D + R+VS E +S ETS+ T NV + F +++
Sbjct: 118 TICVVLAGSKSDLQNQ-RQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFLSVVS 173
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 66.1 bits (154), Expect = 4e-12
Identities = 47/162 (29%), Positives = 78/162 (48%), Gaps = 6/162 (3%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY--RQVISSNKTICTLQITDTTGSH 66
+VV+ G GVGK+ L+ +FV F Y TI + + V+ +K + TLQ+ DT G
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLV-TLQLWDTAGQE 68
Query: 67 QFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCDE 126
+F ++ ++VY+V++ +S + ++ Q + P ++ GN+ D+
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDK 128
Query: 127 SPEIREVSASEGQAQAQAWGVSFM---ETSAKTNHNVTQLFQ 165
R VS ++ S M E SAK N NVT LF+
Sbjct: 129 DASKRAVSLHRALDYCKSKHGSNMIHFEASAKENTNVTDLFE 170
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 61.3 bits (142), Expect = 1e-10
Identities = 41/164 (25%), Positives = 79/164 (48%), Gaps = 8/164 (4%)
Query: 2 PEQSNDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI-EDTYRQVISSNKTICTLQIT 60
P+ +++V+ G GG GK++ V R + G F + YI T+ + + +N +
Sbjct: 4 PQNVPTFKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVW 63
Query: 61 DTTGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLA 120
DT G + ++ +G I+++ V+SR + + + W+ + + NIP++L
Sbjct: 64 DTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRV----CENIPIVLC 119
Query: 121 GNKCDESPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLF 164
GNK D R+V A + + + + SAK+N+N + F
Sbjct: 120 GNKVDVKE--RKVKAKAITFHRKK-NLQYYDISAKSNYNFEKPF 160
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 53.6 bits (123), Expect = 2e-08
Identities = 40/165 (24%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 9 RVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISSNKTICTLQITDTTGSHQ 67
+V + G +GK+SL++ +V+G+F E T+ + + IS T T I D G +
Sbjct: 12 KVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQRE 71
Query: 68 FPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCDE- 126
F M + + A + ++ +S + +L +K W ++ +G +P+++ G K D
Sbjct: 72 FVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE-W--YRQARGFNKTAVPILI-GTKYDHF 127
Query: 127 ---SPEIREVSASEGQAQAQAWGVSFMETSAKTNHNVTQLFQELL 168
E +E + + A+A S + S + NV ++F+ +L
Sbjct: 128 MTFPREDQEEITKQARRYAKAMKASLVFCSTSHSINVQKIFKIVL 172
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 37.1 bits (82), Expect = 0.002
Identities = 35/124 (28%), Positives = 53/124 (42%), Gaps = 13/124 (10%)
Query: 7 DYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQV-ISSN---KTICTLQITDT 62
+ RVV+ G GVGKSSL+ + +E + +I + + I SN +L + DT
Sbjct: 3 EVRVVICGDQGVGKSSLISALI----QEDNVTSIPKVFPIISIPSNPDSNDDVSLVLVDT 58
Query: 63 TGSHQFPAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGN 122
I K + LVY S S E + W GV N+P++L N
Sbjct: 59 QSDSNEREYLAAEIKKANVICLVY--SDNYSYERVSIFWLPYFRSLGV---NVPIVLCEN 113
Query: 123 KCDE 126
K ++
Sbjct: 114 KSED 117
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 34.3 bits (75), Expect = 0.013
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%)
Query: 10 VVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISSNKTICTLQITDTTGSHQF 68
V + G GK++L+ F K T + I + +K + DT G F
Sbjct: 174 VTLMGHVDHGKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAF 233
Query: 69 PAMQRLSISKGHAFILVYSVSSRQSLEELKPIWQTIKEIKGVELPNIPVMLAGNKCDE-- 126
AM++ + +LV + + +KP QT++ IK ++ ++PV++A K D
Sbjct: 234 EAMRKRGANIADIVVLVVAGD-----DGVKP--QTVEAIKHIQSADVPVVVALTKSDRPG 286
Query: 127 SP--EIREVSASEG-QAQAQAWGVSFMETSAKTNHNVTQLFQELLNM 170
+P +I E + G Q +A + SAKT + +L +L +
Sbjct: 287 TPIHKIYEQLLNNGIQVEALGGETQIIPISAKTGKGIPELEAAILTL 333
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.38
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 98 KPIWQTIKEIKGVELPNIPVMLAGNKCDE 126
+ IW TI+ K ++LP +LA +CDE
Sbjct: 265 REIWDTIENNKDLDLPTQQQLLAQYRCDE 293
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 29.5 bits (63), Expect = 0.38
Identities = 13/20 (65%), Positives = 16/20 (80%)
Query: 10 VVVFGAGGVGKSSLVLRFVK 29
VVVFG GVGKS+L+ R +K
Sbjct: 21 VVVFGPSGVGKSTLLKRLLK 40
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 29.1 bits (62), Expect = 0.50
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 14 GAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSNKTICTLQITDTTGSHQF 68
G G S++ GT +Y T+ D V T T+ T T+GSH+F
Sbjct: 70 GRGTTNHSTIYTTINSGTVASTYTVTLADGDVVVKDIEPTAGTVTTTITSGSHEF 124
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 6 NDYRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISSN--KTICTL 57
ND +V++ GAG GK++ +++ ++ + + + YR +I N ++C L
Sbjct: 73 NDIKVLLLGAGDSGKTT-IMKQMRLLYSPGFSQVVRKQYRVMIFENIISSLCLL 125
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 4.6
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 102 QTIKEIKGVELPNIPVMLAGNKCDESPEIREVSASEGQAQAQAW 145
Q IKEI E+P + ++ N+ + S R+ S G+ +A+ W
Sbjct: 625 QVIKEIARKEIPRVYKIIQQNQYNRSTNARKTSQLCGR-EARRW 667
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 93 SLEELKPIWQTIKEIKGVELPNIPVMLAGNKCDESPEIREVSASEGQAQAQAWGVSFMET 152
S +EL+ G+ NIP L ++ + +++ A + Q Q QA S ME
Sbjct: 682 SYDELEQHHANFHNKAGISQSNIPPHLQEHRQSQQHFQQDIEALQSQQQQQATKNSLMEA 741
Query: 153 S 153
+
Sbjct: 742 A 742
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.128 0.358
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,255
Number of Sequences: 5004
Number of extensions: 28939
Number of successful extensions: 107
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 61
Number of HSP's gapped (non-prelim): 26
length of query: 209
length of database: 2,362,478
effective HSP length: 70
effective length of query: 139
effective length of database: 2,012,198
effective search space: 279695522
effective search space used: 279695522
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)
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