GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000302-TA|BGIBMGA000302-PA|undefined
         (925 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    25   3.1  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    24   5.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    23   9.6  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 295 RRSKNKKNLQRQEFNMQ 311
           RR KNKKN QRQ    Q
Sbjct: 294 RRMKNKKNSQRQAAQQQ 310


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 470 FRPIRQNVYAILYNMHHHRFMAHKIKDDRSSGSNDRPCTVLIAEWIYTRTNP 521
           F+P R +V+    ++ H  F      +++S+G+    C + +A     R NP
Sbjct: 464 FQP-RGSVFVRFTHLQHQPFTYKITVNNQSNGNRKGTCRIFLAPKTDERGNP 514


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 625 NINAISSRGVQLGALVMAGVEAALVANDACGAPVPWLVASP 665
           NI   +  GVQL    +A  + ALV      +P+P LV  P
Sbjct: 163 NIILGNGTGVQLVPTRLANGDIALVLPTQGASPLPLLVPIP 203


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,436
Number of Sequences: 317
Number of extensions: 8894
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 925
length of database: 114,650
effective HSP length: 63
effective length of query: 862
effective length of database: 94,679
effective search space: 81613298
effective search space used: 81613298
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)