GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000302-TA|BGIBMGA000302-PA|undefined
         (925 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    28   6.9  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    27   9.1  

>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 281 GTKDGFLKYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVSIHFSKR 338
           G K GF     A G R   K+N Q  + + +    DLD ++L T     E+S + +K+
Sbjct: 83  GGKGGFGSQLRAAGGRMSKKRNEQENQDSCR----DLDGNRLGTIRQAKELSEYLAKK 136


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 272 KQAVQYYLNGTKDGFLKYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEV 331
           K +VQ  LN TK+   +    +  R K +   ++ E        +L++ K+A   +E + 
Sbjct: 116 KSSVQSSLN-TKENTPQQPKKSRNRQKERLERRKAEMKKMSEQAELESEKMADLKNEEKK 174

Query: 332 SIHFSKRLEDYNMVTAN 348
              FSK LE+  +V  +
Sbjct: 175 K--FSKILEEAGLVAVD 189


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,001,455
Number of Sequences: 5004
Number of extensions: 163122
Number of successful extensions: 319
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 319
Number of HSP's gapped (non-prelim): 2
length of query: 925
length of database: 2,362,478
effective HSP length: 79
effective length of query: 846
effective length of database: 1,967,162
effective search space: 1664219052
effective search space used: 1664219052
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)