GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000302-TA|BGIBMGA000302-PA|undefined
         (925 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235...    31   3.2  
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807...    31   5.6  
08_02_1349 - 26309330-26309881,26309902-26310534                       30   9.8  

>01_06_0836 -
           32321431-32321556,32321656-32321872,32321975-32323590,
           32323670-32323753,32323834-32324104,32324294-32324547,
           32324709-32324918,32325839-32326024
          Length = 987

 Score = 31.5 bits (68), Expect = 3.2
 Identities = 18/54 (33%), Positives = 25/54 (46%)

Query: 325 ESSEHEVSIHFSKRLEDYNMVTANASMSADFSMEKQTNDLHHGFASLSLEAGVM 378
           E    E +I   +R  D+    AN  MS D +ME   N LH    +LS +  V+
Sbjct: 339 ERLNQEQAIALERRKHDFESEMANKQMSFDAAMEVTRNALHQRECALSEQESVV 392


>04_01_0617 -
           8076624-8076971,8077761-8077883,8077965-8078035,
           8078108-8078360,8078613-8078768,8078854-8079770,
           8079858-8079927,8082310-8082416,8082722-8082755,
           8083621-8083940,8084031-8084820,8084890-8085046,
           8085647-8086068
          Length = 1255

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 22/106 (20%), Positives = 46/106 (43%), Gaps = 5/106 (4%)

Query: 314 TLDLDTSKLATESSEHEVSIHFSKRLEDYNMVTANASMSADFSMEKQTN-DLHHGFASLS 372
           T DL  S L+TE S  E ++   K+  D   + ++A    DF+ + +++ D       + 
Sbjct: 777 TFDLSCSLLSTEPSSEETTVRLVKK--DQTRLVSSADSENDFAKKSESSQDRTRSSDKVQ 834

Query: 373 LEAGVMSSTXXXXXXXXXXXAEKPQSAIKEGRQATKQVQSDDNCPP 418
           L+  V S+            + K +  +   ++  ++  ++ N PP
Sbjct: 835 LKGFVPSAPKSSQGSRTYVSSAKNRFIVP--KEQLQKTSTEGNAPP 878


>08_02_1349 - 26309330-26309881,26309902-26310534
          Length = 394

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 416 CPPAPAEVLRTCAERHTRGLMHPQLLSIL 444
           C  AP+  LR  + RH  GL  PQ+ S+L
Sbjct: 122 CTKAPSVALRVASLRHRVGLSDPQIASLL 150


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,996,082
Number of Sequences: 37544
Number of extensions: 1131281
Number of successful extensions: 2453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2451
Number of HSP's gapped (non-prelim): 4
length of query: 925
length of database: 14,793,348
effective HSP length: 89
effective length of query: 836
effective length of database: 11,451,932
effective search space: 9573815152
effective search space used: 9573815152
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)