GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000302-TA|BGIBMGA000302-PA|undefined
         (925 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.)               290   3e-78
SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)                   40   0.012
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.8  
SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   1.8  
SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)                 32   2.4  
SB_26373| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   4.2  
SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)                   31   4.2  
SB_58345| Best HMM Match : XPG_N (HMM E-Value=0.15)                    31   5.6  
SB_26594| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   5.6  
SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)               31   5.6  
SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)                   30   7.4  
SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   9.8  

>SB_217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 925

 Score =  290 bits (712), Expect = 3e-78
 Identities = 237/824 (28%), Positives = 368/824 (44%), Gaps = 89/824 (10%)

Query: 1   MGIQDLQTFLES------EGVGVDLFKIARNHSGGLR-LVLDAEGCLDRLYGGYFSDWAS 53
           MG+Q LQ F+ES      E V +  F  AR  +G    LV+DA  C+  LYG Y SDW  
Sbjct: 1   MGLQALQDFVESHCSKAIEQVEIKEFMKARQGAGSKAVLVIDAMSCVRYLYG-YNSDWVC 59

Query: 54  GGQWARCVQFLTTLAQALAEFQVSLCVCFNGSHPTPPALPQH-WIQTQTIYKQRVNSVLH 112
           GGQW   ++ +    +A  +    + V   G   +   L  H W++TQ  ++Q V+ VL 
Sbjct: 60  GGQWNEMLRNIENFVRAFRQQSTEIVVFLAGEGDS---LKLHEWMKTQEKHRQTVHKVLS 116

Query: 113 HITTKGTPPPK-VWWMVSSDDHC--------------------QEVVGLCREKSYAGLVG 151
           H+  +   PPK ++++  +   C                    +E+V   + + Y  ++G
Sbjct: 117 HVARQANFPPKRLFFLPPAAQFCLRLAFRSCGVSVCTSIVDLHKELVLYSKTRRYGAIIG 176

Query: 152 CSGEYLVFQPPRYFSSSLLKLTYRSSLETK-EYMVHDLPQVLNVPQDRLCLMAALLGGVI 210
             G+YL+  PP Y S+   KLT+   + +  ++ +  +   L + Q    L A+LLG   
Sbjct: 177 HHGDYLMLDPPAYLSAD--KLTFNKKVVSSCKFNIDAVFDELGLKQSHRGLFASLLGNSF 234

Query: 211 LSEQSLTDFY-KRLGL---VPKKQ------VPP-EIQIKTICQYVSELP-TSDVDAVCID 258
           + E+ L  F+   LG    + K Q      +PP  + I+ + QYV+ +   S+   +   
Sbjct: 235 IPEEHLAHFHWALLGTDHPLAKNQANGQSVLPPCNVVIRALSQYVNNVADVSNYSGIASQ 294

Query: 259 IF-GDLNDLRAA--KLKQAVQYYLN----GTKDGFLKYKTATGRRSKNKKNL-------Q 304
           +F GD  +L     +L+++++YY        +D  +  K+  GR     +         Q
Sbjct: 295 VFTGDSVNLEEMTDRLRESIEYYSGLQSKAPQDNGIDAKSKKGRGQNEYEYQKLWQHWQQ 354

Query: 305 RQEFNMQPVTLDLDTSKLATESS--EHEVSIHFSKRLEDYNMVTANASMSADFSMEKQTN 362
           RQ+    P        + AT+    E ++S       E  NM       S   +      
Sbjct: 355 RQQIVPPPPVSSKTMEEAATDVQKLEEDLSKLAVSNGESTNMEPDVVPKSPIAAPNAPGE 414

Query: 363 DLHHGFASLSLEAGVMSSTXXXXXXXXXXXAEKPQSAIKEGRQATKQ---VQSDDNCPPA 419
            +     S   E     ++                +A+  G+QA  +   +Q        
Sbjct: 415 AIAPSTPSFQSEPLTPPASFPTPPPSEEATPPAKSAAVSNGQQADNKLDGIQIRGVITSL 474

Query: 420 PAEVLRTCAERHTRGLMHPQLLSILTHRQVTLPVLMEDENHREIPSIHHFFRPIRQNVYA 479
             +VL T  +RH  G M   +  ILT  +VT+   +EDEN+ +I      +RPIRQ VY 
Sbjct: 475 TPQVLNTVLQRHQAGQMSEIIYQILTKAEVTVSAALEDENNTDILPTPLLYRPIRQKVYG 534

Query: 480 ILYNMHHHRFMAHKIKDDRSSGSNDRPCTVLIAEWIYTRTNPGKNPEIVPGVLLDWPVPT 539
           +L++   +         D+  G+       ++ EW          P++V G ++ W VP 
Sbjct: 535 LLFDKKAY---------DKKQGTMPHDAPPIVKEWCVYAGKKLNKPDLVEGTIMQWDVPE 585

Query: 540 VQRLWFGTAPDDKCRRMRAYLSCMRSDTPLMLNTTYVPQHLLILATVLRFIMTSPI--QI 597
           +  LWFG  P D   RM+A+L+CM+SDTP M  TT VPQ L+I+  VLR+++       I
Sbjct: 586 LHPLWFGKEPSDDQNRMKAFLTCMQSDTPNMTKTTMVPQRLVIMCCVLRYLLMQGKGRPI 645

Query: 598 LRRQELDAFLATAFSTDLM---NALHLQEMNINAISSRGVQLGALVMAGVEAALVANDAC 654
           +   ELDAFLA A S  +    N  +L  + +  +  RGVQL ++ M GVEAA +ANDAC
Sbjct: 646 ILPHELDAFLAAALSPHISTECNPSNLMGLKLPRVDMRGVQLASIFMRGVEAAALANDAC 705

Query: 655 GAPVPWLVASPWLYFDGKLLQRNLHRAAHCKHLPQLCDNNLDIVVKVERMRKAILEGLEV 714
           G PVPW +  PW YFDGKL       A++     +LCD     + K++RMR  I+E +  
Sbjct: 706 GCPVPWELVCPWNYFDGKLFMSKYIMASNDVGQLELCDGKNARLEKLQRMRWCIVEKIPQ 765

Query: 715 EFAMAPLPLVAGVLXXXXXXXXXXXXXXXXXLEIAGVVVGQWGG 758
           EF   P                         LE+AGV V  WGG
Sbjct: 766 EFLERP--------RTRGASSKRPVSGLGGTLEVAGVPVAXWGG 801


>SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)
          Length = 611

 Score = 39.5 bits (88), Expect = 0.012
 Identities = 52/234 (22%), Positives = 99/234 (42%), Gaps = 27/234 (11%)

Query: 1   MGIQDLQTFLESEGVGVDLFKIARNHSGGLRLVLDAEGCLDRLYGGYFSDWASGGQWARC 60
           MGI+ L +++E+    +D+++  +      ++V+D    +  LY     D+ +GG++   
Sbjct: 2   MGIRGLSSYIET----LDVWE--KIELKDTKVVIDGSCLVFNLYYNSGLDFRNGGEYYEF 55

Query: 61  VQFLTTLAQALAEFQVSLCVCFNGSHPTPPALPQHWIQTQTIYKQRVNSVLHHITTKGTP 120
            Q +++  QAL+   V   V F+G      A+     +  TI ++  +S+ +     G  
Sbjct: 56  AQVVSSFFQALSSNNVEAYVVFDG------AIDPSGRKVDTIERRMQDSIYNAGEPDGRV 109

Query: 121 PPKVWWMVSS-------------DDHCQEVVGLCREKSYAGLVGCSGEYLVFQPPRYFSS 167
            PK+  +V S             D    E +    +K    ++    ++  F  P  F  
Sbjct: 110 RPKLSALVLSQAMRDIGVKFVRIDCEADEEIASLAKKFQCPVLSDDSDFFSFDLPGGF-I 168

Query: 168 SLLKLTYRS-SLETKEYMVHDLPQVLNVPQDRLCLMAALLGGVILSEQSLTDFY 220
            L  L + S  L TK Y    +   L +  D + L A++LG   +S  ++  FY
Sbjct: 169 RLTSLHWHSFPLSTKLYSRQKMADYLQLRPDLMPLFASVLGNDFVSSSAVEPFY 222


>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 423

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 750 GVVVGQWGGGSYPARAPPRYQQMSAHT 776
           G  + +WGGG YP   PP Y  ++  T
Sbjct: 46  GSRISKWGGGEYPPNPPPLYPPLAIRT 72


>SB_20883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 672

 Score = 32.3 bits (70), Expect = 1.8
 Identities = 23/139 (16%), Positives = 60/139 (43%), Gaps = 1/139 (0%)

Query: 272 KQAVQYYLNGTKDGFLKYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEV 331
           K++ +  +   KDGFL+ KT+T +  +  +  +RQ  N +   +   T +L+    + ++
Sbjct: 403 KRSWRAIMTSKKDGFLELKTSTPQEDREDEEGRRQNENQREGKMAKHTRRLSIARLQAQL 462

Query: 332 SIHFSKRLEDYNMVTANASMSADFSMEKQTNDLHHGFASLSLEAGVMSSTXXXXXXXXXX 391
            +  +++ E+  +         +   ++QT+     + + S     + S           
Sbjct: 463 KLR-TQKFENKRLNLPGFGEDRNELSDEQTSISLSDYDAFSRRPSALPSPRFKQETLTAE 521

Query: 392 XAEKPQSAIKEGRQATKQV 410
            ++K Q  ++E R+   ++
Sbjct: 522 MSKKNQQEMREVRKVQSEM 540


>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
          Length = 266

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 29/117 (24%), Positives = 60/117 (51%), Gaps = 7/117 (5%)

Query: 230 QVPPEIQIKTICQYVSELPTSDVDAVCIDIFG---DLNDLRAAKLKQAVQYYLNGTKDGF 286
           Q   E Q++++ +  + L T++++A   ++     D+++L+A +L QA +      K+G 
Sbjct: 29  QTKLECQVESLTKQKASL-TAELEAERANMLRMKTDMSNLQA-RLNQAEKALEQSRKEGA 86

Query: 287 LKYKTATGRRSKNKKNLQR-QEFNMQPVTLDLDTSKLATESSE-HEVSIHFSKRLED 341
            K KT    ++KN +  Q  Q  N + + L+     L  E+++ HE S+   + + D
Sbjct: 87  KKDKTIEDLKNKNSELEQNVQNLNNEIIKLEAKLEALQLENNKLHEDSLEVKRTIGD 143


>SB_26373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 6/85 (7%)

Query: 1   MGIQDLQTFLESEGVGVDLFKIARNHSGGLRLVLDAEGCLDRLYGGYFSDWASGGQWARC 60
           MGI+ L +++E+    +D+++  +      ++V+D    +  LY     D+ +GG++   
Sbjct: 44  MGIRGLSSYIET----LDVWE--KIELKDTKVVIDGSCLVFNLYYNSGLDFRNGGEYYEF 97

Query: 61  VQFLTTLAQALAEFQVSLCVCFNGS 85
            Q +++  QAL+   V   V F+G+
Sbjct: 98  AQVVSSFFQALSSNNVEAYVVFDGA 122


>SB_22514| Best HMM Match : Drf_FH1 (HMM E-Value=1.8)
          Length = 336

 Score = 31.1 bits (67), Expect = 4.2
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 77  SLCVCFNGSHPTPPALPQHWIQTQTIYKQRVNSVL 111
           SL  C NGSH   P  P HWI++ T  + R   V+
Sbjct: 14  SLVSCANGSHVFDPR-PTHWIKSSTSSQSRKRRVM 47


>SB_58345| Best HMM Match : XPG_N (HMM E-Value=0.15)
          Length = 134

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 6/85 (7%)

Query: 1  MGIQDLQTFLESEGVGVDLFKIARNHSGGLRLVLDAEGCLDRLYGGYFSDWASGGQWARC 60
          MGI+ L +++E+    +D+++  +      ++V+D    +  LY     D+ +GG++   
Sbjct: 2  MGIRGLNSYIET----LDVWE--KIELKDTKVVIDGSCLMFNLYYNSGLDFRNGGEYYEF 55

Query: 61 VQFLTTLAQALAEFQVSLCVCFNGS 85
           Q +T+  QAL+   V   V  +G+
Sbjct: 56 AQVVTSFFQALSSNNVEAYVVLDGA 80


>SB_26594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 78

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 273 QAVQYYLNGTKDGFLKYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVS 332
           +A+  Y+N  K  F    T  GR ++ KK  + +E  + PV L    +K+ +E+   EV+
Sbjct: 2   RALCAYVNNVKVNFRILNTQAGRITRRKKASKLKESQIHPV-LSEPNNKICSETKSFEVT 60


>SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)
          Length = 880

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 424 LRTCAERHTRGLMHPQLLSILTHRQVTLPVLMEDENHREIPSIHHFFRPIRQNVYAILYN 483
           LR C E + RG       S   HR++      E+ + +E+P I H+    R+ + + L++
Sbjct: 801 LRKCTETYNRGRRR---FSNEIHRKLLEFNRRENRDSQELPDISHYMEERRKTMVS-LHS 856

Query: 484 MHHHRFMAHKIKDDRSSGSN 503
           +++ R +  K+ +   S +N
Sbjct: 857 IYNPRAIKSKLNERLDSPTN 876


>SB_59480| Best HMM Match : ZU5 (HMM E-Value=2.4e-38)
          Length = 903

 Score = 30.3 bits (65), Expect = 7.4
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 294 GRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVSIHFSKRLEDYNMVTANASMSA 353
           GR   + K L    ++  PVT+   T     E+  +EV  H     ED +    +  +SA
Sbjct: 761 GRGDVDFKRLAYSSYSSGPVTITKTTITRTVETKSNEVQQHGGDE-EDADTTRLSEYLSA 819

Query: 354 DFSMEKQTNDL 364
           + +ME+  +D+
Sbjct: 820 ETAMEEMFDDV 830


>SB_29636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 306

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 835 PDEVHHQSGESSPQDENTAQEGEAEGTPTPK 865
           P+EV     E SP++E+T +E +A    TPK
Sbjct: 247 PEEVEAPKEEESPKEEDTPKEEDAPKEDTPK 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,131,800
Number of Sequences: 59808
Number of extensions: 1226010
Number of successful extensions: 2664
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2650
Number of HSP's gapped (non-prelim): 15
length of query: 925
length of database: 16,821,457
effective HSP length: 89
effective length of query: 836
effective length of database: 11,498,545
effective search space: 9612783620
effective search space used: 9612783620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)