Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000302-TA|BGIBMGA000302-PA|undefined
(925 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40942-9|AAC47074.6| 703|Caenorhabditis elegans Synaptogenesis ... 35 0.23
AF040659-4|AAK39394.1| 815|Caenorhabditis elegans Half transpor... 35 0.30
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 33 0.93
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 33 0.93
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 33 0.93
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 33 0.93
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 30 8.7
AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical... 30 8.7
>U40942-9|AAC47074.6| 703|Caenorhabditis elegans Synaptogenesis
abnormal protein 1 protein.
Length = 703
Score = 35.1 bits (77), Expect = 0.23
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 87 PTPPALPQHWIQTQTIYKQRVNSVLHHITTKGTPPPKVWWMVSSDDHCQEVV 138
PTPP + + + I + ++ KG PPP + W ++SD+H + +V
Sbjct: 128 PTPPKIVKSHHSLKAIAGDPITQSC--LSRKGKPPPTIGWAIASDEHGKHIV 177
>AF040659-4|AAK39394.1| 815|Caenorhabditis elegans Half transporter
(pgp related)protein 9, isoform a protein.
Length = 815
Score = 34.7 bits (76), Expect = 0.30
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Query: 257 IDIFGDLNDLRAAKLKQAVQYYLNGTKDGFLKYKTATGRRSKNKKNLQRQEFNM------ 310
+D + D +AKL A + +N T DG Y T G + Q+Q +
Sbjct: 622 LDKYDDDMVQNSAKLANAHTFIMNDTTDG---YNTNVGEKGSQMSGGQKQRIAIARALVR 678
Query: 311 QPVTLDLDTSKLATES-SEHEVSIHFSKRLEDYNMV 345
QPV L LD + A ++ SEH V SK L+ ++
Sbjct: 679 QPVVLLLDEATSALDAESEHTVQEAISKNLKGKTVI 714
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 33.1 bits (72), Expect = 0.93
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 288 KYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVSIHFSKRLEDYNMVTA 347
KY++A + +K + + QR ++ VTL L+ +L + S++ + KR E+ A
Sbjct: 1192 KYRSAEEKANKGELDNQRLRSDLATVTLKLERQELKAKDSDNRLR-DSQKRFEEVQSKLA 1250
Query: 348 NASMSADFSME 358
N SA S++
Sbjct: 1251 NLQKSAVESLQ 1261
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 33.1 bits (72), Expect = 0.93
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 288 KYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVSIHFSKRLEDYNMVTA 347
KY++A + +K + + QR ++ VTL L+ +L + S++ + KR E+ A
Sbjct: 1192 KYRSAEEKANKGELDNQRLRSDLATVTLKLERQELKAKDSDNRLR-DSQKRFEEVQSKLA 1250
Query: 348 NASMSADFSME 358
N SA S++
Sbjct: 1251 NLQKSAVESLQ 1261
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 33.1 bits (72), Expect = 0.93
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 288 KYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVSIHFSKRLEDYNMVTA 347
KY++A + +K + + QR ++ VTL L+ +L + S++ + KR E+ A
Sbjct: 952 KYRSAEEKANKGELDNQRLRSDLATVTLKLERQELKAKDSDNRLR-DSQKRFEEVQSKLA 1010
Query: 348 NASMSADFSME 358
N SA S++
Sbjct: 1011 NLQKSAVESLQ 1021
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 33.1 bits (72), Expect = 0.93
Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 288 KYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVSIHFSKRLEDYNMVTA 347
KY++A + +K + + QR ++ VTL L+ +L + S++ + KR E+ A
Sbjct: 1192 KYRSAEEKANKGELDNQRLRSDLATVTLKLERQELKAKDSDNRLR-DSQKRFEEVQSKLA 1250
Query: 348 NASMSADFSME 358
N SA S++
Sbjct: 1251 NLQKSAVESLQ 1261
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily assigned
gene nameprotein 213 protein.
Length = 1437
Score = 29.9 bits (64), Expect = 8.7
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 818 NEPAKPATIAVNGKTVRPDEVHHQSGESSPQDENTAQEGEAEGTPTPKP 866
+E K AT+ + RP + H S ES + E T ++GE + TP+P P
Sbjct: 1219 SETEKKATVDNKERKKRPGKSSHGSKES--KKEPTTEDGEVK-TPSPPP 1264
>AF045642-10|AAC02587.1| 459|Caenorhabditis elegans Hypothetical
protein C17H12.9 protein.
Length = 459
Score = 29.9 bits (64), Expect = 8.7
Identities = 18/83 (21%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 326 SSEHEVSIHFSKRLEDYNMVTANASMSADFSMEKQTNDLHHGFASLSLEAGVMSSTXXXX 385
SS + + + +D +T ++S +DFS DL+H F++ S ++ +++
Sbjct: 121 SSNSSYDMKYEEEEDDCEGITHSSSSPSDFS--NHGTDLNHPFSASSFDSFDVTTVSTTA 178
Query: 386 XXXXXXXAEKPQSAIKEGRQATK 408
+K + I+E TK
Sbjct: 179 TSTIMNSTDKFIARIQEADSTTK 201
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.134 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,148,841
Number of Sequences: 27539
Number of extensions: 926791
Number of successful extensions: 2133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2131
Number of HSP's gapped (non-prelim): 9
length of query: 925
length of database: 12,573,161
effective HSP length: 88
effective length of query: 837
effective length of database: 10,149,729
effective search space: 8495323173
effective search space used: 8495323173
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)
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