GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000302-TA|BGIBMGA000302-PA|undefined
         (925 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR...    31   2.7  
At5g15470.1 68418.m01811 glycosyl transferase family 8 protein c...    31   3.5  
At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase f...    30   8.1  
At1g03360.1 68414.m00315 exonuclease family protein similar to  ...    30   8.1  

>At5g18370.1 68418.m02161 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1210

 Score = 31.5 bits (68), Expect = 2.7
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 541 QRLWFGTAPDDKCRRMRAYLSCMRSDTPLMLNTTYVPQHLLILATVLRFIMTSPIQILRR 600
           ++LW G  P    +RM    +    + P + N T +   LL   T L  I +S       
Sbjct: 676 EKLWEGIQPLKNLKRMELGDARNLKEIPDLSNATNLESLLLSFCTSLLEIPSSIRGTTNL 735

Query: 601 QELD---AFLATAFSTDLMNALHLQEMNINAISS 631
           +ELD          S+ + NA  L+E+N++A S+
Sbjct: 736 KELDLGGCASLVKLSSCICNATSLEELNLSACSN 769


>At5g15470.1 68418.m01811 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 532

 Score = 31.1 bits (67), Expect = 3.5
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 205 LLGGVILSEQSLTDFYKRLGLVPKKQVPPEIQI-KTICQYVSELPTSDVDA 254
           LLG V  SE+   DFYK L  V  +++P  +++  +  Q VS++  +  DA
Sbjct: 81  LLGRVDDSERLARDFYKILNEVSTQEIPDGLKLPNSFSQLVSDMKNNHYDA 131


>At2g24640.1 68415.m02943 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 15 (UBP15)
           [Arabidopsis thaliana] GI:11993475; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 672

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 842 SGESSPQDENTAQEGEAEGTPTPKPXXXXXXXXXXXXXXXXXXXP-EGLQGASEANGPLD 900
           +G+  P  EN A +       TP P                   P E     +E+N PL+
Sbjct: 589 NGKEDPTVENLAVDSSCLDITTPSPSAATEFIPQENERSDTESKPLEKEHSDTESNKPLE 648

Query: 901 KNKVAEQGHSSDKEH 915
           K  +  +    +KEH
Sbjct: 649 KEHLDSESKPLEKEH 663


>At1g03360.1 68414.m00315 exonuclease family protein similar to
           Exosome complex exonuclease RRP4 (Ribosomal RNA
           processing protein 4)(SP:P38792) {Saccharomyces
           cerevisiae}
          Length = 322

 Score = 29.9 bits (64), Expect = 8.1
 Identities = 18/96 (18%), Positives = 38/96 (39%)

Query: 279 LNGTKDGFLKYKTATGRRSKNKKNLQRQEFNMQPVTLDLDTSKLATESSEHEVSIHFSKR 338
           LN  +DG L   +        ++     E NM+ + ++ D       + +H+ S+    R
Sbjct: 113 LNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNIFVEHDVVCAEVRNFQHDGSLQLQAR 172

Query: 339 LEDYNMVTANASMSADFSMEKQTNDLHHGFASLSLE 374
            + Y  +     +  D  + K++    H   SL ++
Sbjct: 173 SQKYGKLEKGQLLKVDPYLVKRSKHHFHYVESLGID 208


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,158,292
Number of Sequences: 28952
Number of extensions: 873648
Number of successful extensions: 1837
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1835
Number of HSP's gapped (non-prelim): 5
length of query: 925
length of database: 12,070,560
effective HSP length: 88
effective length of query: 837
effective length of database: 9,522,784
effective search space: 7970570208
effective search space used: 7970570208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 64 (29.9 bits)