GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000301-TA|BGIBMGA000301-PA|IPR013818|Lipase, N-terminal,
IPR008262|Lipase, active site, IPR000734|Lipase, IPR002331|Pancreatic
lipase
         (553 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical pr...    30   4.9  

>Z80216-2|CAB02279.2|  239|Caenorhabditis elegans Hypothetical
           protein F10G8.2 protein.
          Length = 239

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 17/90 (18%), Positives = 40/90 (44%)

Query: 93  LYTKKNPTDGQLLNVNVNKTIVKSNFDPQKPTKMIVHGFIDTPLSNWVSEMKDELVKAGD 152
           L T+K+      L  N N  IVK+     K ++ +    + + + N+   + +   +   
Sbjct: 136 LITRKSTNYLWRLEKNANFVIVKTGIGKMKQSRPLSPQSLHSLIKNFAPRLTNSQKRRVL 195

Query: 153 FNVVIVDWAGGSLPLYTQATANTRLVGLEI 182
             + ++ W+  SLP    + ++  L+G+ +
Sbjct: 196 VLIFLISWSPISLPFLCTSISHHELIGINV 225


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,923,718
Number of Sequences: 27539
Number of extensions: 669857
Number of successful extensions: 1130
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1129
Number of HSP's gapped (non-prelim): 1
length of query: 553
length of database: 12,573,161
effective HSP length: 85
effective length of query: 468
effective length of database: 10,232,346
effective search space: 4788737928
effective search space used: 4788737928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)