GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000301-TA|BGIBMGA000301-PA|IPR013818|Lipase, N-terminal,
IPR008262|Lipase, active site, IPR000734|Lipase, IPR002331|Pancreatic
lipase
         (553 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g11160.1 68417.m01808 translation initiation factor IF-2, mit...    35   0.16 
At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64...    30   4.6  
At2g44810.1 68415.m05576 defective in anther dehiscence1 (DAD1) ...    30   4.6  
At5g56620.1 68418.m07069 no apical meristem (NAM) family protein...    29   8.0  
At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase, p...    29   8.0  

>At4g11160.1 68417.m01808 translation initiation factor IF-2,
           mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
           Translation initiation factor IF-2, mitochondrial
           precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
          Length = 743

 Score = 34.7 bits (76), Expect = 0.16
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 131 FIDTPLSNWVSEMKDELVKAGDFNVVIVDWAGGSLPLYTQATANTRLVGLEIAHFINTLE 190
           F+DTP     SEM+       D  V++V    G +P   +A A+ R   + +   IN  +
Sbjct: 272 FLDTPGHAAFSEMRARGAAVTDIVVLVVAADDGVMPQTLEAIAHARSANVPVVVAINKCD 331

Query: 191 KDHGLNPQDVHIIGHSLGAHTAGYAG--ERIQ-GLGRITGLDPAE 232
           K  G NP+ V     S G       G  + ++    + TGLD  E
Sbjct: 332 KP-GANPEKVKYQLTSEGIELEDIGGNVQAVEVSAAKSTGLDKLE 375


>At5g14180.1 68418.m01658 lipase family protein similar to SP|Q64194
           Lysosomal acid lipase/cholesteryl ester hydrolase
           precursor (EC 3.1.1.13) {Rattus norvegicus}; contains
           Pfam profile PF04083: ab-hydrolase associated lipase
           region
          Length = 418

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 193 HGLNPQDVHIIGHSLGAHTAGYAGERIQGL 222
           HGL  Q +H +GHSLG    G+A    +GL
Sbjct: 177 HGLTGQKIHYLGHSLGT-LIGFASFSEKGL 205


>At2g44810.1 68415.m05576 defective in anther dehiscence1 (DAD1)
           identical to DEFECTIVE IN ANTHER DEHISCENCE1
           [Arabidopsis thaliana] GI:16215706; contains Pfam
           profile PF01764: Lipase
          Length = 357

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 5/59 (8%)

Query: 163 GSLPLYTQATANTR-LVGLEIAHFINTLEKDHGLNPQDVHIIGHSLGAHTAGYAGERIQ 220
           G L LYT    + R +V  EIA  + +    +G  P  V I GHSLGA  A  A   I+
Sbjct: 165 GFLSLYTSGVHSLRDMVREEIARLLQS----YGDEPLSVTITGHSLGAAIATLAAYDIK 219


>At5g56620.1 68418.m07069 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 386

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 201 HIIGHSLGAHTAGYAGERIQGLGRITGLDPAEPYFQGMPTHIRLDPTDAQLVDVIHTDGK 260
           ++I   L  H      +   G GR+      +P + G+P  ++ DPTD +L++  H + K
Sbjct: 7   NLIDSKLEEHHHLCGSKHCPGCGRMIQA-ATKPNWVGLPAGVKFDPTDQELIE--HLEAK 63


>At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 481

 Score = 29.1 bits (62), Expect = 8.0
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 199 DVH-IIGHSLGAHTAGYAGERIQGLGRITGLDP 230
           DVH +I        AG+ GE IQG+G I  L P
Sbjct: 243 DVHDLIQFGTSGQVAGFIGESIQGVGGIVELAP 275


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.140    0.445 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,409,298
Number of Sequences: 28952
Number of extensions: 648976
Number of successful extensions: 1273
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1272
Number of HSP's gapped (non-prelim): 5
length of query: 553
length of database: 12,070,560
effective HSP length: 85
effective length of query: 468
effective length of database: 9,609,640
effective search space: 4497311520
effective search space used: 4497311520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 62 (29.1 bits)